Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDCBPO00560 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.5■□□□□ 0.39
SDCBPO00560 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.5■□□□□ 0.39
SDCBPO00560 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDCBPO00560 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDCBPO00560 RNF165-205ENST00000588679 2904 ntBASIC17.5■□□□□ 0.39
SDCBPO00560 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SDCBPO00560 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
SDCBPO00560 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.5■□□□□ 0.39
SDCBPO00560 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDCBPO00560 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDCBPO00560 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDCBPO00560 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC17.5■□□□□ 0.39
SDCBPO00560 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC17.5■□□□□ 0.39
SDCBPO00560 AC142381.2-201ENST00000566120 298 ntBASIC17.5■□□□□ 0.39
SDCBPO00560 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDCBPO00560 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDCBPO00560 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDCBPO00560 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
SDCBPO00560 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
SDCBPO00560 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDCBPO00560 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.5■□□□□ 0.39
SDCBPO00560 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.5■□□□□ 0.39
SDCBPO00560 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDCBPO00560 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SDCBPO00560 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDCBPO00560 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDCBPO00560 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
SDCBPO00560 STX5-203ENST00000394690 1568 ntTSL 5 BASIC17.49■□□□□ 0.39
SDCBPO00560 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
SDCBPO00560 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDCBPO00560 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
SDCBPO00560 PXK-203ENST00000383715 1756 ntTSL 5 BASIC17.49■□□□□ 0.39
SDCBPO00560 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SDCBPO00560 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
SDCBPO00560 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC17.49■□□□□ 0.39
SDCBPO00560 SUDS3P1-201ENST00000505831 966 ntBASIC17.49■□□□□ 0.39
SDCBPO00560 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDCBPO00560 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDCBPO00560 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SDCBPO00560 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC17.49■□□□□ 0.39
SDCBPO00560 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SDCBPO00560 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SDCBPO00560 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC17.48■□□□□ 0.39
SDCBPO00560 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC17.48■□□□□ 0.39
SDCBPO00560 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC17.48■□□□□ 0.39
SDCBPO00560 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
SDCBPO00560 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDCBPO00560 AC112907.3-201ENST00000577781 2400 ntBASIC17.48■□□□□ 0.39
SDCBPO00560 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDCBPO00560 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.48■□□□□ 0.39
SDCBPO00560 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDCBPO00560 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDCBPO00560 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC17.48■□□□□ 0.39
SDCBPO00560 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SDCBPO00560 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC17.48■□□□□ 0.39
SDCBPO00560 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDCBPO00560 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC17.48■□□□□ 0.39
SDCBPO00560 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
SDCBPO00560 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SDCBPO00560 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDCBPO00560 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SDCBPO00560 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.48■□□□□ 0.39
SDCBPO00560 BX005040.4-201ENST00000637145 1518 ntBASIC17.47■□□□□ 0.39
SDCBPO00560 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SDCBPO00560 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDCBPO00560 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
SDCBPO00560 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDCBPO00560 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
SDCBPO00560 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC17.47■□□□□ 0.39
SDCBPO00560 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDCBPO00560 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC17.47■□□□□ 0.39
SDCBPO00560 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SDCBPO00560 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SDCBPO00560 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDCBPO00560 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDCBPO00560 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SDCBPO00560 AC007225.1-201ENST00000566331 1836 ntBASIC17.47■□□□□ 0.39
SDCBPO00560 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SDCBPO00560 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC17.47■□□□□ 0.39
SDCBPO00560 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SDCBPO00560 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
SDCBPO00560 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.46■□□□□ 0.39
SDCBPO00560 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC17.46■□□□□ 0.39
SDCBPO00560 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SDCBPO00560 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC17.46■□□□□ 0.39
SDCBPO00560 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SDCBPO00560 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.46■□□□□ 0.39
SDCBPO00560 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SDCBPO00560 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC17.46■□□□□ 0.39
SDCBPO00560 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC17.46■□□□□ 0.39
SDCBPO00560 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC17.46■□□□□ 0.39
SDCBPO00560 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SDCBPO00560 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC17.46■□□□□ 0.39
SDCBPO00560 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SDCBPO00560 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SDCBPO00560 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SDCBPO00560 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
SDCBPO00560 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
SDCBPO00560 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms