Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.2■□□□□ 0.66
HMGN4O00479 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.2■□□□□ 0.66
HMGN4O00479 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGN4O00479 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.2■□□□□ 0.66
HMGN4O00479 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
HMGN4O00479 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
HMGN4O00479 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGN4O00479 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGN4O00479 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
HMGN4O00479 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGN4O00479 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGN4O00479 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGN4O00479 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HMGN4O00479 AC004854.2-201ENST00000608450 1441 ntBASIC19.19■□□□□ 0.66
HMGN4O00479 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.19■□□□□ 0.66
HMGN4O00479 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGN4O00479 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
HMGN4O00479 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.19■□□□□ 0.66
HMGN4O00479 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HMGN4O00479 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
HMGN4O00479 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.19■□□□□ 0.66
HMGN4O00479 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.19■□□□□ 0.66
HMGN4O00479 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGN4O00479 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGN4O00479 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGN4O00479 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.19■□□□□ 0.66
HMGN4O00479 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HMGN4O00479 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGN4O00479 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGN4O00479 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGN4O00479 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGN4O00479 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGN4O00479 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGN4O00479 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.18■□□□□ 0.66
HMGN4O00479 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGN4O00479 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGN4O00479 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGN4O00479 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.18■□□□□ 0.66
HMGN4O00479 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGN4O00479 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
HMGN4O00479 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
HMGN4O00479 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGN4O00479 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGN4O00479 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGN4O00479 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGN4O00479 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGN4O00479 AL121603.2-201ENST00000557373 2117 ntBASIC19.18■□□□□ 0.66
HMGN4O00479 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
HMGN4O00479 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGN4O00479 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGN4O00479 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGN4O00479 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGN4O00479 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
HMGN4O00479 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.17■□□□□ 0.66
HMGN4O00479 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
HMGN4O00479 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGN4O00479 KRT18P20-201ENST00000548986 1279 ntBASIC19.17■□□□□ 0.66
HMGN4O00479 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.17■□□□□ 0.66
HMGN4O00479 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
HMGN4O00479 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGN4O00479 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGN4O00479 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
HMGN4O00479 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGN4O00479 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGN4O00479 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.17■□□□□ 0.66
HMGN4O00479 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
HMGN4O00479 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGN4O00479 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.17■□□□□ 0.66
HMGN4O00479 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.17■□□□□ 0.66
HMGN4O00479 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.17■□□□□ 0.66
HMGN4O00479 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGN4O00479 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGN4O00479 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.16■□□□□ 0.66
HMGN4O00479 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
HMGN4O00479 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HMGN4O00479 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HMGN4O00479 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGN4O00479 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HMGN4O00479 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
HMGN4O00479 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGN4O00479 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGN4O00479 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGN4O00479 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGN4O00479 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.16■□□□□ 0.66
HMGN4O00479 AC116050.2-201ENST00000612102 1779 ntBASIC19.16■□□□□ 0.66
HMGN4O00479 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGN4O00479 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGN4O00479 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGN4O00479 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGN4O00479 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.16■□□□□ 0.66
HMGN4O00479 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HMGN4O00479 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.16■□□□□ 0.66
HMGN4O00479 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGN4O00479 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGN4O00479 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
HMGN4O00479 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGN4O00479 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGN4O00479 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGN4O00479 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGN4O00479 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms