Protein–RNA interactions for Protein: Q9Y6Z2

LINC01558, Uncharacterized protein encoded by LINC01558, humanhuman

Predictions only

Length 57 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01558Q9Y6Z2 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC10.79□□□□□ -0.68
LINC01558Q9Y6Z2 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 EI24-212ENST00000615917 1407 ntTSL 2 BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 TNRC18P3-201ENST00000441896 2691 ntBASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 AL359504.2-201ENST00000605506 1601 ntBASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 AC139713.2-201ENST00000641328 2723 ntBASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
LINC01558Q9Y6Z2 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
LINC01558Q9Y6Z2 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC10.77□□□□□ -0.68
LINC01558Q9Y6Z2 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
LINC01558Q9Y6Z2 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
LINC01558Q9Y6Z2 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC10.77□□□□□ -0.68
LINC01558Q9Y6Z2 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
LINC01558Q9Y6Z2 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
LINC01558Q9Y6Z2 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.68
LINC01558Q9Y6Z2 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 AC018470.1-201ENST00000624790 3129 ntBASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 AC027702.1-201ENST00000563810 1770 ntBASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 AL162377.1-201ENST00000618844 1793 ntBASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
LINC01558Q9Y6Z2 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC10.76□□□□□ -0.69
LINC01558Q9Y6Z2 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC10.76□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms