Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.56■□□□□ 0.72
ATG4BQ9Y4P1 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.56■□□□□ 0.72
ATG4BQ9Y4P1 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ATG4BQ9Y4P1 AC091799.1-201ENST00000422823 811 ntBASIC19.56■□□□□ 0.72
ATG4BQ9Y4P1 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.56■□□□□ 0.72
ATG4BQ9Y4P1 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.56■□□□□ 0.72
ATG4BQ9Y4P1 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ATG4BQ9Y4P1 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
ATG4BQ9Y4P1 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
ATG4BQ9Y4P1 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
ATG4BQ9Y4P1 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
ATG4BQ9Y4P1 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 AC004911.1-201ENST00000416316 871 ntBASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 TERF1P5-201ENST00000477545 1207 ntBASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 AC011767.1-201ENST00000617410 1153 ntBASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.55■□□□□ 0.72
ATG4BQ9Y4P1 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ATG4BQ9Y4P1 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
ATG4BQ9Y4P1 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.53■□□□□ 0.72
ATG4BQ9Y4P1 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
ATG4BQ9Y4P1 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ATG4BQ9Y4P1 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ATG4BQ9Y4P1 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
ATG4BQ9Y4P1 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ATG4BQ9Y4P1 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.53■□□□□ 0.72
ATG4BQ9Y4P1 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.53■□□□□ 0.72
ATG4BQ9Y4P1 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.53■□□□□ 0.72
ATG4BQ9Y4P1 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.53■□□□□ 0.72
ATG4BQ9Y4P1 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.53■□□□□ 0.72
ATG4BQ9Y4P1 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.53■□□□□ 0.72
ATG4BQ9Y4P1 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
ATG4BQ9Y4P1 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.53■□□□□ 0.72
ATG4BQ9Y4P1 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
ATG4BQ9Y4P1 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
ATG4BQ9Y4P1 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ATG4BQ9Y4P1 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ATG4BQ9Y4P1 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
ATG4BQ9Y4P1 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 AC116050.2-201ENST00000612102 1779 ntBASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 BID-214ENST00000617586 542 ntTSL 5 BASIC19.52■□□□□ 0.72
ATG4BQ9Y4P1 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms