Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA2Q9Y261 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA2Q9Y261 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA2Q9Y261 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA2Q9Y261 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA2Q9Y261 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC16.7■□□□□ 0.26
FOXA2Q9Y261 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA2Q9Y261 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA2Q9Y261 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA2Q9Y261 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC16.7■□□□□ 0.26
FOXA2Q9Y261 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
FOXA2Q9Y261 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC16.7■□□□□ 0.26
FOXA2Q9Y261 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
FOXA2Q9Y261 AC026271.2-201ENST00000428091 497 ntBASIC16.7■□□□□ 0.26
FOXA2Q9Y261 AC034268.1-201ENST00000441047 882 ntBASIC16.7■□□□□ 0.26
FOXA2Q9Y261 AC087623.3-201ENST00000607047 1098 ntBASIC16.7■□□□□ 0.26
FOXA2Q9Y261 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA2Q9Y261 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA2Q9Y261 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC16.7■□□□□ 0.26
FOXA2Q9Y261 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
FOXA2Q9Y261 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
FOXA2Q9Y261 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
FOXA2Q9Y261 MFF-207ENST00000409565 1548 ntTSL 2 BASIC16.7■□□□□ 0.26
FOXA2Q9Y261 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 AC073314.1-201ENST00000568729 2216 ntBASIC16.69■□□□□ 0.26
FOXA2Q9Y261 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 MIR5787-201ENST00000611784 55 ntBASIC16.69■□□□□ 0.26
FOXA2Q9Y261 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
FOXA2Q9Y261 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 KRT87P-202ENST00000534226 1464 ntBASIC16.68■□□□□ 0.26
FOXA2Q9Y261 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 AC092667.1-201ENST00000434301 2586 ntBASIC16.68■□□□□ 0.26
FOXA2Q9Y261 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
FOXA2Q9Y261 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC16.67■□□□□ 0.26
FOXA2Q9Y261 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA2Q9Y261 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
FOXA2Q9Y261 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA2Q9Y261 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA2Q9Y261 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA2Q9Y261 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
FOXA2Q9Y261 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA2Q9Y261 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA2Q9Y261 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC16.67■□□□□ 0.26
FOXA2Q9Y261 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC16.67■□□□□ 0.26
FOXA2Q9Y261 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC16.67■□□□□ 0.26
FOXA2Q9Y261 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
FOXA2Q9Y261 AC007225.1-201ENST00000566331 1836 ntBASIC16.67■□□□□ 0.26
FOXA2Q9Y261 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC16.67■□□□□ 0.26
FOXA2Q9Y261 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA2Q9Y261 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA2Q9Y261 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA2Q9Y261 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
FOXA2Q9Y261 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC16.67■□□□□ 0.26
FOXA2Q9Y261 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
FOXA2Q9Y261 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms