Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.7■□□□□ 0.9
VPS39Q96JC1 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.7■□□□□ 0.9
VPS39Q96JC1 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.7■□□□□ 0.9
VPS39Q96JC1 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS39Q96JC1 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.7■□□□□ 0.9
VPS39Q96JC1 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS39Q96JC1 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS39Q96JC1 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS39Q96JC1 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS39Q96JC1 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
VPS39Q96JC1 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS39Q96JC1 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.7■□□□□ 0.9
VPS39Q96JC1 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS39Q96JC1 AP004607.4-201ENST00000530158 1459 ntBASIC20.69■□□□□ 0.9
VPS39Q96JC1 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS39Q96JC1 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS39Q96JC1 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS39Q96JC1 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS39Q96JC1 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
VPS39Q96JC1 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
VPS39Q96JC1 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS39Q96JC1 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS39Q96JC1 MIR6084-201ENST00000622012 110 ntBASIC20.69■□□□□ 0.9
VPS39Q96JC1 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS39Q96JC1 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.69■□□□□ 0.9
VPS39Q96JC1 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS39Q96JC1 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS39Q96JC1 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.69■□□□□ 0.9
VPS39Q96JC1 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS39Q96JC1 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS39Q96JC1 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS39Q96JC1 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.68■□□□□ 0.9
VPS39Q96JC1 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS39Q96JC1 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS39Q96JC1 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
VPS39Q96JC1 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
VPS39Q96JC1 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.68■□□□□ 0.9
VPS39Q96JC1 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS39Q96JC1 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS39Q96JC1 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS39Q96JC1 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS39Q96JC1 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS39Q96JC1 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.68■□□□□ 0.9
VPS39Q96JC1 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS39Q96JC1 AC007225.1-201ENST00000566331 1836 ntBASIC20.68■□□□□ 0.9
VPS39Q96JC1 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS39Q96JC1 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS39Q96JC1 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS39Q96JC1 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS39Q96JC1 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS39Q96JC1 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS39Q96JC1 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS39Q96JC1 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS39Q96JC1 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS39Q96JC1 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS39Q96JC1 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS39Q96JC1 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS39Q96JC1 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
VPS39Q96JC1 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS39Q96JC1 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS39Q96JC1 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
VPS39Q96JC1 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
VPS39Q96JC1 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS39Q96JC1 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS39Q96JC1 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS39Q96JC1 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS39Q96JC1 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS39Q96JC1 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.66■□□□□ 0.9
VPS39Q96JC1 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS39Q96JC1 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS39Q96JC1 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS39Q96JC1 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.66■□□□□ 0.9
VPS39Q96JC1 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
VPS39Q96JC1 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS39Q96JC1 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS39Q96JC1 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.66■□□□□ 0.9
VPS39Q96JC1 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.66■□□□□ 0.9
VPS39Q96JC1 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.66■□□□□ 0.9
VPS39Q96JC1 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS39Q96JC1 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS39Q96JC1 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
VPS39Q96JC1 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.66■□□□□ 0.9
VPS39Q96JC1 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS39Q96JC1 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS39Q96JC1 AC027702.1-201ENST00000563810 1770 ntBASIC20.66■□□□□ 0.9
VPS39Q96JC1 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS39Q96JC1 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS39Q96JC1 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS39Q96JC1 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS39Q96JC1 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS39Q96JC1 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS39Q96JC1 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS39Q96JC1 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS39Q96JC1 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS39Q96JC1 KRT87P-202ENST00000534226 1464 ntBASIC20.65■□□□□ 0.9
VPS39Q96JC1 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS39Q96JC1 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
VPS39Q96JC1 IRS3P-201ENST00000223076 1006 ntBASIC20.65■□□□□ 0.9
VPS39Q96JC1 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
VPS39Q96JC1 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms