Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CLIP3Q96DZ5 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 AL591742.1-201ENST00000604433 565 ntBASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 AC016405.3-201ENST00000607710 860 ntBASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CLIP3Q96DZ5 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP3Q96DZ5 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP3Q96DZ5 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP3Q96DZ5 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.85■□□□□ 0.77
CLIP3Q96DZ5 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP3Q96DZ5 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP3Q96DZ5 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP3Q96DZ5 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP3Q96DZ5 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP3Q96DZ5 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP3Q96DZ5 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
CLIP3Q96DZ5 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CLIP3Q96DZ5 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP3Q96DZ5 CD99P1-205ENST00000527459 561 ntBASIC19.85■□□□□ 0.77
CLIP3Q96DZ5 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.85■□□□□ 0.77
CLIP3Q96DZ5 AC243732.1-201ENST00000612648 864 ntBASIC19.85■□□□□ 0.77
CLIP3Q96DZ5 AC133041.1-202ENST00000642053 222 ntBASIC19.85■□□□□ 0.77
CLIP3Q96DZ5 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP3Q96DZ5 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP3Q96DZ5 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP3Q96DZ5 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CLIP3Q96DZ5 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
CLIP3Q96DZ5 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.84■□□□□ 0.77
CLIP3Q96DZ5 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CLIP3Q96DZ5 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CLIP3Q96DZ5 C11orf96-202ENST00000528572 1834 ntBASIC19.84■□□□□ 0.77
CLIP3Q96DZ5 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLIP3Q96DZ5 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
CLIP3Q96DZ5 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLIP3Q96DZ5 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLIP3Q96DZ5 AC069152.1-201ENST00000438030 544 ntBASIC19.84■□□□□ 0.77
CLIP3Q96DZ5 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.84■□□□□ 0.77
CLIP3Q96DZ5 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CLIP3Q96DZ5 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLIP3Q96DZ5 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLIP3Q96DZ5 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CLIP3Q96DZ5 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLIP3Q96DZ5 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLIP3Q96DZ5 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.84■□□□□ 0.77
CLIP3Q96DZ5 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
CLIP3Q96DZ5 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CLIP3Q96DZ5 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CLIP3Q96DZ5 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.83■□□□□ 0.77
CLIP3Q96DZ5 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CLIP3Q96DZ5 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CLIP3Q96DZ5 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CLIP3Q96DZ5 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CLIP3Q96DZ5 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CLIP3Q96DZ5 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CLIP3Q96DZ5 AC245052.3-201ENST00000450182 901 ntBASIC19.83■□□□□ 0.77
CLIP3Q96DZ5 AC093787.1-201ENST00000450396 207 ntBASIC19.83■□□□□ 0.77
CLIP3Q96DZ5 MIR4758-201ENST00000577688 71 ntBASIC19.83■□□□□ 0.77
CLIP3Q96DZ5 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.83■□□□□ 0.77
CLIP3Q96DZ5 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.83■□□□□ 0.76
CLIP3Q96DZ5 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CLIP3Q96DZ5 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.83■□□□□ 0.76
CLIP3Q96DZ5 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.76
CLIP3Q96DZ5 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CLIP3Q96DZ5 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CLIP3Q96DZ5 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 MIPEPP3-201ENST00000412105 444 ntBASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 AL512625.2-201ENST00000417533 625 ntBASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.82■□□□□ 0.76
CLIP3Q96DZ5 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms