Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 AC020907.5-201ENST00000624372 1936 ntBASIC12.98□□□□□ -0.33
LINC00643Q86TS7 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 AC106820.2-201ENST00000563775 3264 ntBASIC12.98□□□□□ -0.33
LINC00643Q86TS7 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC00643Q86TS7 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00643Q86TS7 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC12.96□□□□□ -0.33
LINC00643Q86TS7 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00643Q86TS7 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00643Q86TS7 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00643Q86TS7 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00643Q86TS7 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC12.96□□□□□ -0.33
LINC00643Q86TS7 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00643Q86TS7 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00643Q86TS7 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC12.96□□□□□ -0.33
LINC00643Q86TS7 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
LINC00643Q86TS7 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC12.96□□□□□ -0.33
LINC00643Q86TS7 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
LINC00643Q86TS7 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC12.96□□□□□ -0.33
LINC00643Q86TS7 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
LINC00643Q86TS7 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
LINC00643Q86TS7 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
LINC00643Q86TS7 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
LINC00643Q86TS7 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC12.96□□□□□ -0.34
LINC00643Q86TS7 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC12.96□□□□□ -0.34
LINC00643Q86TS7 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
LINC00643Q86TS7 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
LINC00643Q86TS7 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
LINC00643Q86TS7 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC12.96□□□□□ -0.34
LINC00643Q86TS7 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
LINC00643Q86TS7 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.34
LINC00643Q86TS7 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.34
LINC00643Q86TS7 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
LINC00643Q86TS7 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 AC027702.1-201ENST00000563810 1770 ntBASIC12.95□□□□□ -0.34
LINC00643Q86TS7 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 PKD1P1-201ENST00000458669 6805 ntBASIC12.95□□□□□ -0.34
LINC00643Q86TS7 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC12.95□□□□□ -0.34
LINC00643Q86TS7 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms