Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.87
ZNF549Q6P9A3 AC011484.1-201ENST00000377652 1995 ntBASIC20.52■□□□□ 0.87
ZNF549Q6P9A3 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
ZNF549Q6P9A3 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
ZNF549Q6P9A3 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 LINC01006-201ENST00000333319 2292 ntBASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 AC097381.1-201ENST00000429019 1296 ntBASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.51■□□□□ 0.87
ZNF549Q6P9A3 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF549Q6P9A3 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF549Q6P9A3 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
ZNF549Q6P9A3 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF549Q6P9A3 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF549Q6P9A3 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.5■□□□□ 0.87
ZNF549Q6P9A3 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.5■□□□□ 0.87
ZNF549Q6P9A3 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF549Q6P9A3 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.5■□□□□ 0.87
ZNF549Q6P9A3 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.5■□□□□ 0.87
ZNF549Q6P9A3 AC120498.10-201ENST00000621827 505 ntBASIC20.5■□□□□ 0.87
ZNF549Q6P9A3 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF549Q6P9A3 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF549Q6P9A3 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF549Q6P9A3 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ZNF549Q6P9A3 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 AC007225.1-201ENST00000566331 1836 ntBASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 KRT18P20-201ENST00000548986 1279 ntBASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 AC087623.3-201ENST00000607047 1098 ntBASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 AC073314.1-201ENST00000568729 2216 ntBASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.49■□□□□ 0.87
ZNF549Q6P9A3 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 AC092667.1-201ENST00000434301 2586 ntBASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 AC245052.3-201ENST00000450182 901 ntBASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 MIR6821-201ENST00000617625 74 ntBASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ZNF549Q6P9A3 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
ZNF549Q6P9A3 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.47■□□□□ 0.87
ZNF549Q6P9A3 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF549Q6P9A3 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.47■□□□□ 0.87
ZNF549Q6P9A3 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
ZNF549Q6P9A3 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.47■□□□□ 0.87
ZNF549Q6P9A3 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.47■□□□□ 0.87
ZNF549Q6P9A3 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF549Q6P9A3 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF549Q6P9A3 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF549Q6P9A3 AC073130.3-201ENST00000624389 2278 ntBASIC20.47■□□□□ 0.87
ZNF549Q6P9A3 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF549Q6P9A3 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ZNF549Q6P9A3 LINC01521-201ENST00000504184 1943 ntBASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms