Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC14.96□□□□□ -0.01
COL7A1Q02388 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
COL7A1Q02388 NTF6B-201ENST00000591913 560 ntBASIC14.96□□□□□ -0.01
COL7A1Q02388 AC008175.2-201ENST00000612840 297 ntBASIC14.96□□□□□ -0.01
COL7A1Q02388 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC14.96□□□□□ -0.01
COL7A1Q02388 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL7A1Q02388 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL7A1Q02388 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC14.96□□□□□ -0.01
COL7A1Q02388 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC14.96□□□□□ -0.01
COL7A1Q02388 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL7A1Q02388 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
COL7A1Q02388 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC14.96□□□□□ -0.01
COL7A1Q02388 REXO2-208ENST00000539754 791 ntTSL 2 BASIC14.96□□□□□ -0.01
COL7A1Q02388 CRK-204ENST00000574295 1391 ntTSL 5 BASIC14.96□□□□□ -0.01
COL7A1Q02388 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
COL7A1Q02388 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL7A1Q02388 COMT-203ENST00000403184 2217 ntTSL 2 BASIC14.96□□□□□ -0.02
COL7A1Q02388 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC14.96□□□□□ -0.02
COL7A1Q02388 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL7A1Q02388 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL7A1Q02388 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL7A1Q02388 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL7A1Q02388 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC14.96□□□□□ -0.02
COL7A1Q02388 NUDT16P1-203ENST00000513809 620 ntBASIC14.96□□□□□ -0.02
COL7A1Q02388 AC005829.2-201ENST00000571422 1056 ntBASIC14.96□□□□□ -0.02
COL7A1Q02388 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC14.96□□□□□ -0.02
COL7A1Q02388 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC14.96□□□□□ -0.02
COL7A1Q02388 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC14.95□□□□□ -0.02
COL7A1Q02388 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
COL7A1Q02388 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC14.95□□□□□ -0.02
COL7A1Q02388 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
COL7A1Q02388 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC14.95□□□□□ -0.02
COL7A1Q02388 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
COL7A1Q02388 AF186192.3-201ENST00000583427 947 ntBASIC14.95□□□□□ -0.02
COL7A1Q02388 REXO1L10P-201ENST00000615707 1290 ntBASIC14.95□□□□□ -0.02
COL7A1Q02388 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC14.95□□□□□ -0.02
COL7A1Q02388 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
COL7A1Q02388 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL7A1Q02388 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
COL7A1Q02388 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
COL7A1Q02388 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC14.95□□□□□ -0.02
COL7A1Q02388 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC14.95□□□□□ -0.02
COL7A1Q02388 AC113410.3-201ENST00000623366 203 ntBASIC14.95□□□□□ -0.02
COL7A1Q02388 CABP2-204ENST00000636477 941 ntTSL 5 BASIC14.95□□□□□ -0.02
COL7A1Q02388 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL7A1Q02388 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL7A1Q02388 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC14.94□□□□□ -0.02
COL7A1Q02388 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC14.94□□□□□ -0.02
COL7A1Q02388 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL7A1Q02388 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC14.94□□□□□ -0.02
COL7A1Q02388 FAM21FP-204ENST00000608637 956 ntBASIC14.94□□□□□ -0.02
COL7A1Q02388 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL7A1Q02388 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC14.94□□□□□ -0.02
COL7A1Q02388 AC073508.3-201ENST00000619697 1419 ntBASIC14.94□□□□□ -0.02
COL7A1Q02388 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC14.94□□□□□ -0.02
COL7A1Q02388 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL7A1Q02388 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL7A1Q02388 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC14.94□□□□□ -0.02
COL7A1Q02388 MFF-205ENST00000354503 1085 ntTSL 2 BASIC14.94□□□□□ -0.02
COL7A1Q02388 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
COL7A1Q02388 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL7A1Q02388 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL7A1Q02388 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
COL7A1Q02388 AC093323.1-202ENST00000635031 2045 ntBASIC14.94□□□□□ -0.02
COL7A1Q02388 TERF1P1-201ENST00000311003 1181 ntBASIC14.93□□□□□ -0.02
COL7A1Q02388 RNF146-204ENST00000476956 884 ntTSL 2 BASIC14.93□□□□□ -0.02
COL7A1Q02388 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
COL7A1Q02388 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC14.93□□□□□ -0.02
COL7A1Q02388 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL7A1Q02388 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL7A1Q02388 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL7A1Q02388 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL7A1Q02388 AC091799.1-201ENST00000422823 811 ntBASIC14.93□□□□□ -0.02
COL7A1Q02388 UPK3BP1-201ENST00000428678 509 ntBASIC14.93□□□□□ -0.02
COL7A1Q02388 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL7A1Q02388 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC14.93□□□□□ -0.02
COL7A1Q02388 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL7A1Q02388 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL7A1Q02388 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL7A1Q02388 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL7A1Q02388 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL7A1Q02388 LTBR-211ENST00000543190 785 ntTSL 3 BASIC14.93□□□□□ -0.02
COL7A1Q02388 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL7A1Q02388 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC14.92□□□□□ -0.02
COL7A1Q02388 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
COL7A1Q02388 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL7A1Q02388 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL7A1Q02388 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL7A1Q02388 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL7A1Q02388 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC14.92□□□□□ -0.02
COL7A1Q02388 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL7A1Q02388 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL7A1Q02388 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL7A1Q02388 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL7A1Q02388 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL7A1Q02388 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL7A1Q02388 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL7A1Q02388 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC14.92□□□□□ -0.02
COL7A1Q02388 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC14.92□□□□□ -0.02
COL7A1Q02388 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms