Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
HDAC4P56524 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.58■■□□□ 1.05
HDAC4P56524 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
HDAC4P56524 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.58■■□□□ 1.05
HDAC4P56524 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
HDAC4P56524 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.58■■□□□ 1.05
HDAC4P56524 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.58■■□□□ 1.05
HDAC4P56524 KRT18P11-201ENST00000435214 1283 ntBASIC21.58■■□□□ 1.05
HDAC4P56524 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC21.58■■□□□ 1.05
HDAC4P56524 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.58■■□□□ 1.05
HDAC4P56524 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.58■■□□□ 1.05
HDAC4P56524 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
HDAC4P56524 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.58■■□□□ 1.04
HDAC4P56524 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
HDAC4P56524 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
HDAC4P56524 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.57■■□□□ 1.04
HDAC4P56524 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HDAC4P56524 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.57■■□□□ 1.04
HDAC4P56524 AC016769.1-201ENST00000409132 1010 ntBASIC21.57■■□□□ 1.04
HDAC4P56524 AC091799.1-201ENST00000422823 811 ntBASIC21.57■■□□□ 1.04
HDAC4P56524 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HDAC4P56524 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HDAC4P56524 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.57■■□□□ 1.04
HDAC4P56524 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.57■■□□□ 1.04
HDAC4P56524 MFSD11-216ENST00000590393 1141 ntBASIC21.57■■□□□ 1.04
HDAC4P56524 AC010536.3-201ENST00000620306 533 ntBASIC21.57■■□□□ 1.04
HDAC4P56524 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
HDAC4P56524 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HDAC4P56524 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.57■■□□□ 1.04
HDAC4P56524 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HDAC4P56524 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HDAC4P56524 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.57■■□□□ 1.04
HDAC4P56524 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HDAC4P56524 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.56■■□□□ 1.04
HDAC4P56524 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
HDAC4P56524 AC011484.1-201ENST00000377652 1995 ntBASIC21.56■■□□□ 1.04
HDAC4P56524 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
HDAC4P56524 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HDAC4P56524 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
HDAC4P56524 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.56■■□□□ 1.04
HDAC4P56524 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.56■■□□□ 1.04
HDAC4P56524 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
HDAC4P56524 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
HDAC4P56524 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HDAC4P56524 AC092437.1-201ENST00000624794 1048 ntBASIC21.56■■□□□ 1.04
HDAC4P56524 AC006128.1-201ENST00000624704 1661 ntBASIC21.56■■□□□ 1.04
HDAC4P56524 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.56■■□□□ 1.04
HDAC4P56524 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HDAC4P56524 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
HDAC4P56524 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
HDAC4P56524 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
HDAC4P56524 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HDAC4P56524 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HDAC4P56524 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
HDAC4P56524 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HDAC4P56524 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
HDAC4P56524 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.55■■□□□ 1.04
HDAC4P56524 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
HDAC4P56524 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
HDAC4P56524 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.55■■□□□ 1.04
HDAC4P56524 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.55■■□□□ 1.04
HDAC4P56524 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HDAC4P56524 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.55■■□□□ 1.04
HDAC4P56524 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.55■■□□□ 1.04
HDAC4P56524 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
HDAC4P56524 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HDAC4P56524 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HDAC4P56524 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.55■■□□□ 1.04
HDAC4P56524 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
HDAC4P56524 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.55■■□□□ 1.04
HDAC4P56524 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HDAC4P56524 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.54■■□□□ 1.04
HDAC4P56524 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
HDAC4P56524 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HDAC4P56524 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HDAC4P56524 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HDAC4P56524 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
HDAC4P56524 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HDAC4P56524 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HDAC4P56524 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HDAC4P56524 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.54■■□□□ 1.04
HDAC4P56524 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HDAC4P56524 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HDAC4P56524 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HDAC4P56524 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.54■■□□□ 1.04
HDAC4P56524 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC21.54■■□□□ 1.04
HDAC4P56524 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HDAC4P56524 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.54■■□□□ 1.04
HDAC4P56524 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
HDAC4P56524 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
HDAC4P56524 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21.53■■□□□ 1.04
HDAC4P56524 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HDAC4P56524 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HDAC4P56524 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HDAC4P56524 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.53■■□□□ 1.04
HDAC4P56524 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HDAC4P56524 TERF1P5-201ENST00000477545 1207 ntBASIC21.53■■□□□ 1.04
HDAC4P56524 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.53■■□□□ 1.04
HDAC4P56524 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.53■■□□□ 1.04
HDAC4P56524 IKBKGP1-201ENST00000612193 1073 ntBASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms