Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
FOXA1P55317 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.03■□□□□ 0.8
FOXA1P55317 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
FOXA1P55317 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
FOXA1P55317 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
FOXA1P55317 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
FOXA1P55317 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
FOXA1P55317 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
FOXA1P55317 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
FOXA1P55317 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
FOXA1P55317 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.03■□□□□ 0.8
FOXA1P55317 AC112907.3-201ENST00000577781 2400 ntBASIC20.03■□□□□ 0.8
FOXA1P55317 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
FOXA1P55317 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
FOXA1P55317 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXA1P55317 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
FOXA1P55317 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXA1P55317 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
FOXA1P55317 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.02■□□□□ 0.8
FOXA1P55317 AC142381.2-201ENST00000566120 298 ntBASIC20.02■□□□□ 0.8
FOXA1P55317 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.02■□□□□ 0.8
FOXA1P55317 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
FOXA1P55317 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXA1P55317 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXA1P55317 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXA1P55317 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
FOXA1P55317 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.02■□□□□ 0.79
FOXA1P55317 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
FOXA1P55317 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.01■□□□□ 0.79
FOXA1P55317 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
FOXA1P55317 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
FOXA1P55317 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
FOXA1P55317 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
FOXA1P55317 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
FOXA1P55317 KRT87P-202ENST00000534226 1464 ntBASIC20.01■□□□□ 0.79
FOXA1P55317 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.01■□□□□ 0.79
FOXA1P55317 AFG3L1P-217ENST00000557444 2447 ntBASIC20.01■□□□□ 0.79
FOXA1P55317 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
FOXA1P55317 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.01■□□□□ 0.79
FOXA1P55317 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.01■□□□□ 0.79
FOXA1P55317 AC079140.4-201ENST00000507448 529 ntBASIC20.01■□□□□ 0.79
FOXA1P55317 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.01■□□□□ 0.79
FOXA1P55317 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
FOXA1P55317 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
FOXA1P55317 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.01■□□□□ 0.79
FOXA1P55317 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.01■□□□□ 0.79
FOXA1P55317 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
FOXA1P55317 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
FOXA1P55317 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
FOXA1P55317 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
FOXA1P55317 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.01■□□□□ 0.79
FOXA1P55317 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
FOXA1P55317 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXA1P55317 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20■□□□□ 0.79
FOXA1P55317 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20■□□□□ 0.79
FOXA1P55317 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20■□□□□ 0.79
FOXA1P55317 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20■□□□□ 0.79
FOXA1P55317 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXA1P55317 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXA1P55317 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXA1P55317 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
FOXA1P55317 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20■□□□□ 0.79
FOXA1P55317 NME4-202ENST00000382940 766 ntTSL 3 BASIC20■□□□□ 0.79
FOXA1P55317 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20■□□□□ 0.79
FOXA1P55317 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20■□□□□ 0.79
FOXA1P55317 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20■□□□□ 0.79
FOXA1P55317 AL121603.2-201ENST00000557373 2117 ntBASIC20■□□□□ 0.79
FOXA1P55317 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20■□□□□ 0.79
FOXA1P55317 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
FOXA1P55317 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20■□□□□ 0.79
FOXA1P55317 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
FOXA1P55317 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
FOXA1P55317 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
FOXA1P55317 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
FOXA1P55317 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
FOXA1P55317 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
FOXA1P55317 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
FOXA1P55317 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
FOXA1P55317 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.99■□□□□ 0.79
FOXA1P55317 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.99■□□□□ 0.79
FOXA1P55317 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.99■□□□□ 0.79
FOXA1P55317 AL162377.1-201ENST00000618844 1793 ntBASIC19.99■□□□□ 0.79
FOXA1P55317 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
FOXA1P55317 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.99■□□□□ 0.79
FOXA1P55317 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.99■□□□□ 0.79
FOXA1P55317 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.99■□□□□ 0.79
FOXA1P55317 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.99■□□□□ 0.79
FOXA1P55317 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.99■□□□□ 0.79
FOXA1P55317 RARRES2P11-201ENST00000635158 484 ntBASIC19.99■□□□□ 0.79
FOXA1P55317 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
FOXA1P55317 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.99■□□□□ 0.79
FOXA1P55317 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
FOXA1P55317 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.99■□□□□ 0.79
FOXA1P55317 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
FOXA1P55317 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXA1P55317 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
FOXA1P55317 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXA1P55317 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.98■□□□□ 0.79
FOXA1P55317 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
FOXA1P55317 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms