Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
MSH2P43246 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH2P43246 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.98■□□□□ 0.95
MSH2P43246 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH2P43246 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
MSH2P43246 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
MSH2P43246 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH2P43246 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MSH2P43246 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH2P43246 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.98■□□□□ 0.95
MSH2P43246 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH2P43246 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH2P43246 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.97■□□□□ 0.95
MSH2P43246 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
MSH2P43246 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH2P43246 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.97■□□□□ 0.95
MSH2P43246 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
MSH2P43246 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH2P43246 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH2P43246 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH2P43246 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH2P43246 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
MSH2P43246 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
MSH2P43246 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH2P43246 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.97■□□□□ 0.95
MSH2P43246 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH2P43246 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.97■□□□□ 0.95
MSH2P43246 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.97■□□□□ 0.95
MSH2P43246 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH2P43246 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.97■□□□□ 0.95
MSH2P43246 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH2P43246 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
MSH2P43246 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH2P43246 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH2P43246 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH2P43246 AC009237.3-201ENST00000393279 1427 ntBASIC20.96■□□□□ 0.95
MSH2P43246 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
MSH2P43246 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
MSH2P43246 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.96■□□□□ 0.95
MSH2P43246 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
MSH2P43246 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH2P43246 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH2P43246 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH2P43246 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
MSH2P43246 AC133561.4-201ENST00000566112 224 ntBASIC20.96■□□□□ 0.95
MSH2P43246 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH2P43246 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH2P43246 AC020907.5-201ENST00000624372 1936 ntBASIC20.96■□□□□ 0.95
MSH2P43246 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.95■□□□□ 0.95
MSH2P43246 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH2P43246 PCDHAC2-203ENST00000615316 3011 ntBASIC20.95■□□□□ 0.94
MSH2P43246 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MSH2P43246 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH2P43246 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH2P43246 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH2P43246 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
MSH2P43246 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH2P43246 UNC93B3-201ENST00000308076 687 ntBASIC20.95■□□□□ 0.94
MSH2P43246 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH2P43246 BX842568.3-201ENST00000418104 571 ntBASIC20.95■□□□□ 0.94
MSH2P43246 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.95■□□□□ 0.94
MSH2P43246 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH2P43246 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MSH2P43246 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
MSH2P43246 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH2P43246 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.95■□□□□ 0.94
MSH2P43246 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.95■□□□□ 0.94
MSH2P43246 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH2P43246 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
MSH2P43246 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
MSH2P43246 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH2P43246 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.95■□□□□ 0.94
MSH2P43246 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH2P43246 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.95■□□□□ 0.94
MSH2P43246 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSH2P43246 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH2P43246 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSH2P43246 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.94■□□□□ 0.94
MSH2P43246 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH2P43246 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH2P43246 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.94■□□□□ 0.94
MSH2P43246 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH2P43246 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH2P43246 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.94■□□□□ 0.94
MSH2P43246 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSH2P43246 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
MSH2P43246 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSH2P43246 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.94■□□□□ 0.94
MSH2P43246 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.94■□□□□ 0.94
MSH2P43246 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH2P43246 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
MSH2P43246 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.93■□□□□ 0.94
MSH2P43246 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH2P43246 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH2P43246 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.93■□□□□ 0.94
MSH2P43246 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
MSH2P43246 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
MSH2P43246 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.93■□□□□ 0.94
MSH2P43246 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
MSH2P43246 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms