Protein–RNA interactions for Protein: P22362

CCL1, C-C motif chemokine 1, humanhuman

Predictions only

Length 96 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL1P22362 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCL1P22362 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC17.83■□□□□ 0.44
CCL1P22362 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.83■□□□□ 0.44
CCL1P22362 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC17.83■□□□□ 0.44
CCL1P22362 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCL1P22362 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCL1P22362 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCL1P22362 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCL1P22362 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC17.82■□□□□ 0.44
CCL1P22362 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCL1P22362 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC17.82■□□□□ 0.44
CCL1P22362 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCL1P22362 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCL1P22362 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCL1P22362 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC17.82■□□□□ 0.44
CCL1P22362 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC17.82■□□□□ 0.44
CCL1P22362 DUX4L2-201ENST00000561772 1275 ntBASIC17.82■□□□□ 0.44
CCL1P22362 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC17.82■□□□□ 0.44
CCL1P22362 DUX4L6-201ENST00000626483 1275 ntBASIC17.82■□□□□ 0.44
CCL1P22362 DUX4L1-201ENST00000627662 1275 ntBASIC17.82■□□□□ 0.44
CCL1P22362 DUX4L8-201ENST00000629013 1275 ntBASIC17.82■□□□□ 0.44
CCL1P22362 DUX4L3-201ENST00000630187 1275 ntBASIC17.82■□□□□ 0.44
CCL1P22362 DUX4L7-201ENST00000630678 1275 ntBASIC17.82■□□□□ 0.44
CCL1P22362 DUX4L5-201ENST00000630834 1275 ntBASIC17.82■□□□□ 0.44
CCL1P22362 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.82■□□□□ 0.44
CCL1P22362 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCL1P22362 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCL1P22362 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CCL1P22362 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC17.81■□□□□ 0.44
CCL1P22362 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCL1P22362 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCL1P22362 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC17.81■□□□□ 0.44
CCL1P22362 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCL1P22362 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCL1P22362 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CCL1P22362 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCL1P22362 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCL1P22362 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC17.81■□□□□ 0.44
CCL1P22362 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCL1P22362 AK1-201ENST00000223836 736 ntTSL 3 BASIC17.81■□□□□ 0.44
CCL1P22362 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC17.81■□□□□ 0.44
CCL1P22362 AC123595.1-201ENST00000440769 1046 ntBASIC17.81■□□□□ 0.44
CCL1P22362 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCL1P22362 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC17.81■□□□□ 0.44
CCL1P22362 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC17.81■□□□□ 0.44
CCL1P22362 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.81■□□□□ 0.44
CCL1P22362 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCL1P22362 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCL1P22362 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCL1P22362 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC17.81■□□□□ 0.44
CCL1P22362 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CCL1P22362 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCL1P22362 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC17.8■□□□□ 0.44
CCL1P22362 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCL1P22362 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCL1P22362 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCL1P22362 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CCL1P22362 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC17.8■□□□□ 0.44
CCL1P22362 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCL1P22362 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCL1P22362 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC17.8■□□□□ 0.44
CCL1P22362 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCL1P22362 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC17.8■□□□□ 0.44
CCL1P22362 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC17.8■□□□□ 0.44
CCL1P22362 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC17.8■□□□□ 0.44
CCL1P22362 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCL1P22362 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CCL1P22362 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCL1P22362 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCL1P22362 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCL1P22362 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCL1P22362 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CCL1P22362 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCL1P22362 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CCL1P22362 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.79■□□□□ 0.44
CCL1P22362 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCL1P22362 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCL1P22362 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCL1P22362 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC17.79■□□□□ 0.44
CCL1P22362 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CCL1P22362 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCL1P22362 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC17.79■□□□□ 0.44
CCL1P22362 TERF1P2-201ENST00000583350 1212 ntBASIC17.79■□□□□ 0.44
CCL1P22362 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCL1P22362 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC17.79■□□□□ 0.44
CCL1P22362 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCL1P22362 AL512408.1-201ENST00000569378 2000 ntBASIC17.79■□□□□ 0.44
CCL1P22362 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC17.79■□□□□ 0.44
CCL1P22362 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
CCL1P22362 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCL1P22362 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCL1P22362 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CCL1P22362 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC17.79■□□□□ 0.44
CCL1P22362 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCL1P22362 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC17.78■□□□□ 0.44
CCL1P22362 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC17.78■□□□□ 0.44
CCL1P22362 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CCL1P22362 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCL1P22362 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CCL1P22362 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms