Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.15■□□□□ 0.5
LMX1BO60663 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1BO60663 AC073111.5-205ENST00000641717 521 ntBASIC18.15■□□□□ 0.5
LMX1BO60663 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
LMX1BO60663 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1BO60663 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1BO60663 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1BO60663 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.15■□□□□ 0.5
LMX1BO60663 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
LMX1BO60663 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LMX1BO60663 AC009237.3-201ENST00000393279 1427 ntBASIC18.15■□□□□ 0.5
LMX1BO60663 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
LMX1BO60663 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.14■□□□□ 0.5
LMX1BO60663 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
LMX1BO60663 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
LMX1BO60663 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
LMX1BO60663 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
LMX1BO60663 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.14■□□□□ 0.49
LMX1BO60663 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC18.14■□□□□ 0.49
LMX1BO60663 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1BO60663 AC073314.1-201ENST00000568729 2216 ntBASIC18.14■□□□□ 0.49
LMX1BO60663 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1BO60663 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1BO60663 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
LMX1BO60663 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
LMX1BO60663 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1BO60663 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1BO60663 CDCA4P2-201ENST00000441182 718 ntBASIC18.14■□□□□ 0.49
LMX1BO60663 AC026185.1-201ENST00000445748 174 ntBASIC18.14■□□□□ 0.49
LMX1BO60663 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.14■□□□□ 0.49
LMX1BO60663 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.14■□□□□ 0.49
LMX1BO60663 AC005224.4-201ENST00000583262 1652 ntBASIC18.14■□□□□ 0.49
LMX1BO60663 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.14■□□□□ 0.49
LMX1BO60663 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.14■□□□□ 0.49
LMX1BO60663 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
LMX1BO60663 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LMX1BO60663 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.14■□□□□ 0.49
LMX1BO60663 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1BO60663 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1BO60663 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1BO60663 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
LMX1BO60663 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1BO60663 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1BO60663 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.13■□□□□ 0.49
LMX1BO60663 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1BO60663 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.13■□□□□ 0.49
LMX1BO60663 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1BO60663 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.13■□□□□ 0.49
LMX1BO60663 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.13■□□□□ 0.49
LMX1BO60663 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC18.13■□□□□ 0.49
LMX1BO60663 BID-214ENST00000617586 542 ntTSL 5 BASIC18.13■□□□□ 0.49
LMX1BO60663 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
LMX1BO60663 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1BO60663 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
LMX1BO60663 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC18.13■□□□□ 0.49
LMX1BO60663 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1BO60663 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1BO60663 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1BO60663 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
LMX1BO60663 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1BO60663 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1BO60663 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
LMX1BO60663 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1BO60663 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1BO60663 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
LMX1BO60663 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1BO60663 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1BO60663 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
LMX1BO60663 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1BO60663 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1BO60663 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1BO60663 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1BO60663 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.12■□□□□ 0.49
LMX1BO60663 RAP2CP1-201ENST00000605103 478 ntBASIC18.12■□□□□ 0.49
LMX1BO60663 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC18.12■□□□□ 0.49
LMX1BO60663 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.12■□□□□ 0.49
LMX1BO60663 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1BO60663 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1BO60663 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.12■□□□□ 0.49
LMX1BO60663 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
LMX1BO60663 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LMX1BO60663 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.12■□□□□ 0.49
LMX1BO60663 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.12■□□□□ 0.49
LMX1BO60663 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1BO60663 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LMX1BO60663 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.11■□□□□ 0.49
LMX1BO60663 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1BO60663 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.11■□□□□ 0.49
LMX1BO60663 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1BO60663 AL391422.3-201ENST00000603791 2761 ntBASIC18.11■□□□□ 0.49
LMX1BO60663 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1BO60663 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1BO60663 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1BO60663 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.11■□□□□ 0.49
LMX1BO60663 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.11■□□□□ 0.49
LMX1BO60663 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.11■□□□□ 0.49
LMX1BO60663 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1BO60663 TPRG1LP1-201ENST00000598702 760 ntBASIC18.11■□□□□ 0.49
LMX1BO60663 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LMX1BO60663 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms