Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM38O00635 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM38O00635 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM38O00635 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
TRIM38O00635 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
TRIM38O00635 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM38O00635 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM38O00635 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM38O00635 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM38O00635 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.75■□□□□ 0.91
TRIM38O00635 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM38O00635 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM38O00635 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM38O00635 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.75■□□□□ 0.91
TRIM38O00635 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM38O00635 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM38O00635 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
TRIM38O00635 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM38O00635 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM38O00635 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.74■□□□□ 0.91
TRIM38O00635 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM38O00635 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM38O00635 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM38O00635 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM38O00635 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM38O00635 CYP2T1P-201ENST00000432607 1285 ntBASIC20.74■□□□□ 0.91
TRIM38O00635 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.74■□□□□ 0.91
TRIM38O00635 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM38O00635 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM38O00635 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM38O00635 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM38O00635 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.73■□□□□ 0.91
TRIM38O00635 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM38O00635 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.73■□□□□ 0.91
TRIM38O00635 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM38O00635 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM38O00635 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM38O00635 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM38O00635 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM38O00635 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.73■□□□□ 0.91
TRIM38O00635 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM38O00635 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
TRIM38O00635 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
TRIM38O00635 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
TRIM38O00635 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM38O00635 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM38O00635 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM38O00635 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM38O00635 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM38O00635 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM38O00635 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM38O00635 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
TRIM38O00635 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM38O00635 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
TRIM38O00635 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.72■□□□□ 0.91
TRIM38O00635 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.72■□□□□ 0.91
TRIM38O00635 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.72■□□□□ 0.91
TRIM38O00635 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM38O00635 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM38O00635 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM38O00635 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.72■□□□□ 0.91
TRIM38O00635 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.72■□□□□ 0.91
TRIM38O00635 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM38O00635 Z98882.1-201ENST00000622160 2253 ntBASIC20.72■□□□□ 0.91
TRIM38O00635 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM38O00635 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM38O00635 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM38O00635 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM38O00635 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM38O00635 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM38O00635 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM38O00635 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM38O00635 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM38O00635 AL121603.2-201ENST00000557373 2117 ntBASIC20.71■□□□□ 0.91
TRIM38O00635 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM38O00635 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM38O00635 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM38O00635 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
TRIM38O00635 FAM201B-201ENST00000458407 597 ntBASIC20.71■□□□□ 0.91
TRIM38O00635 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM38O00635 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM38O00635 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM38O00635 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.71■□□□□ 0.91
TRIM38O00635 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM38O00635 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
TRIM38O00635 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM38O00635 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM38O00635 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
TRIM38O00635 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM38O00635 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM38O00635 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.7■□□□□ 0.9
TRIM38O00635 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
TRIM38O00635 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM38O00635 MIPEPP3-201ENST00000412105 444 ntBASIC20.7■□□□□ 0.9
TRIM38O00635 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.7■□□□□ 0.9
TRIM38O00635 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.7■□□□□ 0.9
TRIM38O00635 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.7■□□□□ 0.9
TRIM38O00635 MIR4758-201ENST00000577688 71 ntBASIC20.7■□□□□ 0.9
TRIM38O00635 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.7■□□□□ 0.9
TRIM38O00635 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms