Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 PKD1P6-201ENST00000343738 4769 ntBASIC23.21■■□□□ 1.31
COL4A3BPQ9Y5P4 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
COL4A3BPQ9Y5P4 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL4A3BPQ9Y5P4 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC23.21■■□□□ 1.31
COL4A3BPQ9Y5P4 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC23.21■■□□□ 1.31
COL4A3BPQ9Y5P4 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC23.21■■□□□ 1.31
COL4A3BPQ9Y5P4 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL4A3BPQ9Y5P4 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC23.21■■□□□ 1.31
COL4A3BPQ9Y5P4 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC23.21■■□□□ 1.31
COL4A3BPQ9Y5P4 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC23.21■■□□□ 1.31
COL4A3BPQ9Y5P4 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC23.21■■□□□ 1.31
COL4A3BPQ9Y5P4 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC23.21■■□□□ 1.31
COL4A3BPQ9Y5P4 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL4A3BPQ9Y5P4 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC23.21■■□□□ 1.31
COL4A3BPQ9Y5P4 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
COL4A3BPQ9Y5P4 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL4A3BPQ9Y5P4 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL4A3BPQ9Y5P4 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL4A3BPQ9Y5P4 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC23.2■■□□□ 1.3
COL4A3BPQ9Y5P4 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL4A3BPQ9Y5P4 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC23.2■■□□□ 1.3
COL4A3BPQ9Y5P4 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL4A3BPQ9Y5P4 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
COL4A3BPQ9Y5P4 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
COL4A3BPQ9Y5P4 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC23.2■■□□□ 1.3
COL4A3BPQ9Y5P4 AC104771.1-201ENST00000603335 964 ntBASIC23.2■■□□□ 1.3
COL4A3BPQ9Y5P4 WT1-AS_3.1-201ENST00000613262 234 ntBASIC23.2■■□□□ 1.3
COL4A3BPQ9Y5P4 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC23.2■■□□□ 1.3
COL4A3BPQ9Y5P4 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL4A3BPQ9Y5P4 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL4A3BPQ9Y5P4 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL4A3BPQ9Y5P4 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC23.2■■□□□ 1.3
COL4A3BPQ9Y5P4 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A3BPQ9Y5P4 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL4A3BPQ9Y5P4 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC23.19■■□□□ 1.3
COL4A3BPQ9Y5P4 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
COL4A3BPQ9Y5P4 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
COL4A3BPQ9Y5P4 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
COL4A3BPQ9Y5P4 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
COL4A3BPQ9Y5P4 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL4A3BPQ9Y5P4 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
COL4A3BPQ9Y5P4 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC23.18■■□□□ 1.3
COL4A3BPQ9Y5P4 GPX1P1-201ENST00000388829 606 ntBASIC23.18■■□□□ 1.3
COL4A3BPQ9Y5P4 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL4A3BPQ9Y5P4 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC23.18■■□□□ 1.3
COL4A3BPQ9Y5P4 AC007322.4-201ENST00000509611 723 ntBASIC23.18■■□□□ 1.3
COL4A3BPQ9Y5P4 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC23.18■■□□□ 1.3
COL4A3BPQ9Y5P4 AL109923.1-201ENST00000618799 583 ntBASIC23.18■■□□□ 1.3
COL4A3BPQ9Y5P4 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL4A3BPQ9Y5P4 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
COL4A3BPQ9Y5P4 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 APTR-203ENST00000430801 583 ntTSL 5 BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 FGF8-207ENST00000618991 856 ntTSL 3 BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 PALM-207ENST00000590161 2137 ntTSL 4 BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL4A3BPQ9Y5P4 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A3BPQ9Y5P4 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
COL4A3BPQ9Y5P4 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC23.16■■□□□ 1.3
COL4A3BPQ9Y5P4 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC23.16■■□□□ 1.3
COL4A3BPQ9Y5P4 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A3BPQ9Y5P4 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A3BPQ9Y5P4 AL121832.2-201ENST00000610979 668 ntBASIC23.16■■□□□ 1.3
COL4A3BPQ9Y5P4 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL4A3BPQ9Y5P4 RBM17P2-201ENST00000616397 1405 ntBASIC23.16■■□□□ 1.3
COL4A3BPQ9Y5P4 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A3BPQ9Y5P4 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL4A3BPQ9Y5P4 AL049796.1-201ENST00000565336 1766 ntBASIC23.15■■□□□ 1.3
COL4A3BPQ9Y5P4 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC23.15■■□□□ 1.3
COL4A3BPQ9Y5P4 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC23.15■■□□□ 1.3
COL4A3BPQ9Y5P4 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
COL4A3BPQ9Y5P4 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
COL4A3BPQ9Y5P4 AC068338.2-201ENST00000563278 1430 ntBASIC23.15■■□□□ 1.3
COL4A3BPQ9Y5P4 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC23.15■■□□□ 1.3
COL4A3BPQ9Y5P4 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC23.14■■□□□ 1.3
COL4A3BPQ9Y5P4 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
COL4A3BPQ9Y5P4 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC23.14■■□□□ 1.3
COL4A3BPQ9Y5P4 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
COL4A3BPQ9Y5P4 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
COL4A3BPQ9Y5P4 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL4A3BPQ9Y5P4 AC083906.2-201ENST00000511578 360 ntBASIC23.14■■□□□ 1.29
COL4A3BPQ9Y5P4 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL4A3BPQ9Y5P4 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL4A3BPQ9Y5P4 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms