Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 RARRES2P6-201ENST00000567333 442 ntBASIC16.74■□□□□ 0.27
FOXA2Q9Y261 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 CPT2-209ENST00000636935 803 ntTSL 5 BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 AP005212.1-201ENST00000581547 1997 ntBASIC16.74■□□□□ 0.27
FOXA2Q9Y261 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC16.74■□□□□ 0.27
FOXA2Q9Y261 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 MIR935-201ENST00000401179 91 ntBASIC16.73■□□□□ 0.27
FOXA2Q9Y261 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 AC079140.4-201ENST00000507448 529 ntBASIC16.73■□□□□ 0.27
FOXA2Q9Y261 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 PLD4-205ENST00000553861 667 ntTSL 2 BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 CCDC92B-201ENST00000575506 885 ntBASIC16.73■□□□□ 0.27
FOXA2Q9Y261 TERF1P2-201ENST00000583350 1212 ntBASIC16.73■□□□□ 0.27
FOXA2Q9Y261 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 RARG-204ENST00000543726 1779 ntTSL 2 BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
FOXA2Q9Y261 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
FOXA2Q9Y261 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA2Q9Y261 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA2Q9Y261 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA2Q9Y261 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA2Q9Y261 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC16.72■□□□□ 0.27
FOXA2Q9Y261 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA2Q9Y261 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC16.72■□□□□ 0.27
FOXA2Q9Y261 KRT18P14-201ENST00000534205 1250 ntBASIC16.72■□□□□ 0.27
FOXA2Q9Y261 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC16.72■□□□□ 0.27
FOXA2Q9Y261 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA2Q9Y261 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC16.72■□□□□ 0.27
FOXA2Q9Y261 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC16.72■□□□□ 0.27
FOXA2Q9Y261 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA2Q9Y261 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
FOXA2Q9Y261 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
FOXA2Q9Y261 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
FOXA2Q9Y261 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC16.71■□□□□ 0.27
FOXA2Q9Y261 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
FOXA2Q9Y261 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA2Q9Y261 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA2Q9Y261 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA2Q9Y261 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
FOXA2Q9Y261 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC16.71■□□□□ 0.27
FOXA2Q9Y261 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
FOXA2Q9Y261 RNF146-206ENST00000480444 843 ntTSL 2 BASIC16.71■□□□□ 0.27
FOXA2Q9Y261 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC16.71■□□□□ 0.27
FOXA2Q9Y261 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
FOXA2Q9Y261 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC16.71■□□□□ 0.27
FOXA2Q9Y261 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms