Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
LHX3Q9UBR4 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LHX3Q9UBR4 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LHX3Q9UBR4 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LHX3Q9UBR4 AC007322.3-201ENST00000426526 701 ntBASIC20.97■□□□□ 0.95
LHX3Q9UBR4 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.97■□□□□ 0.95
LHX3Q9UBR4 CDV3P1-201ENST00000471403 739 ntBASIC20.97■□□□□ 0.95
LHX3Q9UBR4 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.97■□□□□ 0.95
LHX3Q9UBR4 RARRES2P4-201ENST00000514074 484 ntBASIC20.97■□□□□ 0.95
LHX3Q9UBR4 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LHX3Q9UBR4 FAM21FP-204ENST00000608637 956 ntBASIC20.97■□□□□ 0.95
LHX3Q9UBR4 AL121832.2-201ENST00000610979 668 ntBASIC20.97■□□□□ 0.95
LHX3Q9UBR4 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.97■□□□□ 0.95
LHX3Q9UBR4 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
LHX3Q9UBR4 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LHX3Q9UBR4 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LHX3Q9UBR4 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LHX3Q9UBR4 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
LHX3Q9UBR4 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.97■□□□□ 0.95
LHX3Q9UBR4 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
LHX3Q9UBR4 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LHX3Q9UBR4 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LHX3Q9UBR4 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LHX3Q9UBR4 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
LHX3Q9UBR4 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.96■□□□□ 0.95
LHX3Q9UBR4 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.96■□□□□ 0.95
LHX3Q9UBR4 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
LHX3Q9UBR4 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.96■□□□□ 0.95
LHX3Q9UBR4 AC093787.1-201ENST00000450396 207 ntBASIC20.96■□□□□ 0.95
LHX3Q9UBR4 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.96■□□□□ 0.95
LHX3Q9UBR4 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.96■□□□□ 0.95
LHX3Q9UBR4 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.96■□□□□ 0.95
LHX3Q9UBR4 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.96■□□□□ 0.95
LHX3Q9UBR4 AC069236.1-201ENST00000604339 616 ntBASIC20.96■□□□□ 0.95
LHX3Q9UBR4 OR10C1-204ENST00000622521 1039 ntBASIC20.96■□□□□ 0.95
LHX3Q9UBR4 AC007375.3-201ENST00000600936 2314 ntBASIC20.96■□□□□ 0.95
LHX3Q9UBR4 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LHX3Q9UBR4 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
LHX3Q9UBR4 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LHX3Q9UBR4 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.95
LHX3Q9UBR4 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LHX3Q9UBR4 AC116050.2-201ENST00000612102 1779 ntBASIC20.95■□□□□ 0.94
LHX3Q9UBR4 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LHX3Q9UBR4 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
LHX3Q9UBR4 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LHX3Q9UBR4 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LHX3Q9UBR4 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LHX3Q9UBR4 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.95■□□□□ 0.94
LHX3Q9UBR4 GUSBP6-202ENST00000438529 1198 ntBASIC20.95■□□□□ 0.94
LHX3Q9UBR4 AC083906.2-201ENST00000511578 360 ntBASIC20.95■□□□□ 0.94
LHX3Q9UBR4 AF201337.1-201ENST00000520239 748 ntBASIC20.95■□□□□ 0.94
LHX3Q9UBR4 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.95■□□□□ 0.94
LHX3Q9UBR4 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LHX3Q9UBR4 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LHX3Q9UBR4 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
LHX3Q9UBR4 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LHX3Q9UBR4 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LHX3Q9UBR4 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LHX3Q9UBR4 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
LHX3Q9UBR4 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
LHX3Q9UBR4 ID1-201ENST00000376105 1233 ntBASIC20.94■□□□□ 0.94
LHX3Q9UBR4 GPX1P1-201ENST00000388829 606 ntBASIC20.94■□□□□ 0.94
LHX3Q9UBR4 HLA-L-209ENST00000420110 1011 ntBASIC20.94■□□□□ 0.94
LHX3Q9UBR4 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.94■□□□□ 0.94
LHX3Q9UBR4 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.94■□□□□ 0.94
LHX3Q9UBR4 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
LHX3Q9UBR4 AC105036.2-201ENST00000569468 176 ntBASIC20.94■□□□□ 0.94
LHX3Q9UBR4 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LHX3Q9UBR4 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LHX3Q9UBR4 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LHX3Q9UBR4 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LHX3Q9UBR4 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
LHX3Q9UBR4 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LHX3Q9UBR4 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LHX3Q9UBR4 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
LHX3Q9UBR4 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
LHX3Q9UBR4 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LHX3Q9UBR4 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LHX3Q9UBR4 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
LHX3Q9UBR4 AC104771.1-201ENST00000603335 964 ntBASIC20.93■□□□□ 0.94
LHX3Q9UBR4 AC008694.1-202ENST00000636953 945 ntBASIC20.93■□□□□ 0.94
LHX3Q9UBR4 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LHX3Q9UBR4 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
LHX3Q9UBR4 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LHX3Q9UBR4 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.93■□□□□ 0.94
LHX3Q9UBR4 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
LHX3Q9UBR4 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
LHX3Q9UBR4 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.92■□□□□ 0.94
LHX3Q9UBR4 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LHX3Q9UBR4 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.92■□□□□ 0.94
LHX3Q9UBR4 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.92■□□□□ 0.94
LHX3Q9UBR4 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.92■□□□□ 0.94
LHX3Q9UBR4 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LHX3Q9UBR4 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LHX3Q9UBR4 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LHX3Q9UBR4 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LHX3Q9UBR4 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
LHX3Q9UBR4 AL512625.2-201ENST00000417533 625 ntBASIC20.91■□□□□ 0.94
LHX3Q9UBR4 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LHX3Q9UBR4 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms