Protein–RNA interactions for Protein: Q9P1Z3

HCN3, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HCN3Q9P1Z3 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
HCN3Q9P1Z3 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
HCN3Q9P1Z3 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.72■□□□□ 0.75
HCN3Q9P1Z3 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HCN3Q9P1Z3 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HCN3Q9P1Z3 AC006970.2-201ENST00000450065 779 ntBASIC19.72■□□□□ 0.75
HCN3Q9P1Z3 AC245052.3-201ENST00000450182 901 ntBASIC19.72■□□□□ 0.75
HCN3Q9P1Z3 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HCN3Q9P1Z3 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.72■□□□□ 0.75
HCN3Q9P1Z3 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HCN3Q9P1Z3 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.72■□□□□ 0.75
HCN3Q9P1Z3 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.72■□□□□ 0.75
HCN3Q9P1Z3 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HCN3Q9P1Z3 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HCN3Q9P1Z3 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
HCN3Q9P1Z3 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HCN3Q9P1Z3 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.72■□□□□ 0.75
HCN3Q9P1Z3 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.72■□□□□ 0.75
HCN3Q9P1Z3 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.72■□□□□ 0.75
HCN3Q9P1Z3 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
HCN3Q9P1Z3 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
HCN3Q9P1Z3 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
HCN3Q9P1Z3 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.71■□□□□ 0.75
HCN3Q9P1Z3 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HCN3Q9P1Z3 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HCN3Q9P1Z3 CROCCP5-201ENST00000436658 830 ntBASIC19.71■□□□□ 0.75
HCN3Q9P1Z3 AC005181.1-201ENST00000604782 1256 ntBASIC19.71■□□□□ 0.75
HCN3Q9P1Z3 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.71■□□□□ 0.75
HCN3Q9P1Z3 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
HCN3Q9P1Z3 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.71■□□□□ 0.75
HCN3Q9P1Z3 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
HCN3Q9P1Z3 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HCN3Q9P1Z3 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.7■□□□□ 0.74
HCN3Q9P1Z3 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.7■□□□□ 0.74
HCN3Q9P1Z3 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HCN3Q9P1Z3 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HCN3Q9P1Z3 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
HCN3Q9P1Z3 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HCN3Q9P1Z3 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
HCN3Q9P1Z3 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HCN3Q9P1Z3 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.7■□□□□ 0.74
HCN3Q9P1Z3 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HCN3Q9P1Z3 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.7■□□□□ 0.74
HCN3Q9P1Z3 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.7■□□□□ 0.74
HCN3Q9P1Z3 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HCN3Q9P1Z3 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.7■□□□□ 0.74
HCN3Q9P1Z3 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.7■□□□□ 0.74
HCN3Q9P1Z3 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.7■□□□□ 0.74
HCN3Q9P1Z3 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.7■□□□□ 0.74
HCN3Q9P1Z3 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HCN3Q9P1Z3 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HCN3Q9P1Z3 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
HCN3Q9P1Z3 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HCN3Q9P1Z3 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HCN3Q9P1Z3 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.69■□□□□ 0.74
HCN3Q9P1Z3 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HCN3Q9P1Z3 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
HCN3Q9P1Z3 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.69■□□□□ 0.74
HCN3Q9P1Z3 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
HCN3Q9P1Z3 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
HCN3Q9P1Z3 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HCN3Q9P1Z3 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HCN3Q9P1Z3 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HCN3Q9P1Z3 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
HCN3Q9P1Z3 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
HCN3Q9P1Z3 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HCN3Q9P1Z3 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
HCN3Q9P1Z3 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
HCN3Q9P1Z3 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HCN3Q9P1Z3 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.68■□□□□ 0.74
HCN3Q9P1Z3 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HCN3Q9P1Z3 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.68■□□□□ 0.74
HCN3Q9P1Z3 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.68■□□□□ 0.74
HCN3Q9P1Z3 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.68■□□□□ 0.74
HCN3Q9P1Z3 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HCN3Q9P1Z3 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.68■□□□□ 0.74
HCN3Q9P1Z3 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HCN3Q9P1Z3 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.67■□□□□ 0.74
HCN3Q9P1Z3 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
HCN3Q9P1Z3 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.67■□□□□ 0.74
HCN3Q9P1Z3 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.67■□□□□ 0.74
HCN3Q9P1Z3 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
HCN3Q9P1Z3 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HCN3Q9P1Z3 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.67■□□□□ 0.74
HCN3Q9P1Z3 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.67■□□□□ 0.74
HCN3Q9P1Z3 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HCN3Q9P1Z3 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HCN3Q9P1Z3 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.67■□□□□ 0.74
HCN3Q9P1Z3 AC243732.1-201ENST00000612648 864 ntBASIC19.67■□□□□ 0.74
HCN3Q9P1Z3 AL050303.2-201ENST00000619798 666 ntBASIC19.67■□□□□ 0.74
HCN3Q9P1Z3 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.67■□□□□ 0.74
HCN3Q9P1Z3 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.67■□□□□ 0.74
HCN3Q9P1Z3 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
HCN3Q9P1Z3 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HCN3Q9P1Z3 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
HCN3Q9P1Z3 SLC25A24-204ENST00000569674 2357 ntBASIC19.66■□□□□ 0.74
HCN3Q9P1Z3 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HCN3Q9P1Z3 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HCN3Q9P1Z3 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
HCN3Q9P1Z3 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms