Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
DDX56Q9NY93 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.57■■□□□ 1.04
DDX56Q9NY93 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
DDX56Q9NY93 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
DDX56Q9NY93 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
DDX56Q9NY93 AP005212.1-201ENST00000581547 1997 ntBASIC21.57■■□□□ 1.04
DDX56Q9NY93 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
DDX56Q9NY93 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
DDX56Q9NY93 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
DDX56Q9NY93 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
DDX56Q9NY93 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
DDX56Q9NY93 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
DDX56Q9NY93 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
DDX56Q9NY93 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.56■■□□□ 1.04
DDX56Q9NY93 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
DDX56Q9NY93 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
DDX56Q9NY93 YBX1P1-201ENST00000445822 960 ntBASIC21.56■■□□□ 1.04
DDX56Q9NY93 AC245052.3-201ENST00000450182 901 ntBASIC21.56■■□□□ 1.04
DDX56Q9NY93 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
DDX56Q9NY93 DUX4L2-201ENST00000561772 1275 ntBASIC21.56■■□□□ 1.04
DDX56Q9NY93 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.56■■□□□ 1.04
DDX56Q9NY93 DUX4L6-201ENST00000626483 1275 ntBASIC21.56■■□□□ 1.04
DDX56Q9NY93 DUX4L1-201ENST00000627662 1275 ntBASIC21.56■■□□□ 1.04
DDX56Q9NY93 DUX4L8-201ENST00000629013 1275 ntBASIC21.56■■□□□ 1.04
DDX56Q9NY93 DUX4L3-201ENST00000630187 1275 ntBASIC21.56■■□□□ 1.04
DDX56Q9NY93 DUX4L7-201ENST00000630678 1275 ntBASIC21.56■■□□□ 1.04
DDX56Q9NY93 DUX4L5-201ENST00000630834 1275 ntBASIC21.56■■□□□ 1.04
DDX56Q9NY93 RARRES2P11-201ENST00000635158 484 ntBASIC21.56■■□□□ 1.04
DDX56Q9NY93 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
DDX56Q9NY93 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
DDX56Q9NY93 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
DDX56Q9NY93 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
DDX56Q9NY93 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
DDX56Q9NY93 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.55■■□□□ 1.04
DDX56Q9NY93 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
DDX56Q9NY93 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC21.55■■□□□ 1.04
DDX56Q9NY93 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
DDX56Q9NY93 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
DDX56Q9NY93 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
DDX56Q9NY93 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
DDX56Q9NY93 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.55■■□□□ 1.04
DDX56Q9NY93 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.55■■□□□ 1.04
DDX56Q9NY93 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.55■■□□□ 1.04
DDX56Q9NY93 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
DDX56Q9NY93 TERF1P2-201ENST00000583350 1212 ntBASIC21.55■■□□□ 1.04
DDX56Q9NY93 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.55■■□□□ 1.04
DDX56Q9NY93 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.55■■□□□ 1.04
DDX56Q9NY93 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
DDX56Q9NY93 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
DDX56Q9NY93 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
DDX56Q9NY93 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
DDX56Q9NY93 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
DDX56Q9NY93 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
DDX56Q9NY93 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
DDX56Q9NY93 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
DDX56Q9NY93 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
DDX56Q9NY93 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
DDX56Q9NY93 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
DDX56Q9NY93 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
DDX56Q9NY93 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
DDX56Q9NY93 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
DDX56Q9NY93 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.54■■□□□ 1.04
DDX56Q9NY93 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.54■■□□□ 1.04
DDX56Q9NY93 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.54■■□□□ 1.04
DDX56Q9NY93 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
DDX56Q9NY93 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.54■■□□□ 1.04
DDX56Q9NY93 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.54■■□□□ 1.04
DDX56Q9NY93 AC104187.1-201ENST00000607510 612 ntBASIC21.54■■□□□ 1.04
DDX56Q9NY93 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.54■■□□□ 1.04
DDX56Q9NY93 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
DDX56Q9NY93 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
DDX56Q9NY93 AC073130.3-201ENST00000624389 2278 ntBASIC21.54■■□□□ 1.04
DDX56Q9NY93 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
DDX56Q9NY93 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
DDX56Q9NY93 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.54■■□□□ 1.04
DDX56Q9NY93 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.54■■□□□ 1.04
DDX56Q9NY93 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
DDX56Q9NY93 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
DDX56Q9NY93 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
DDX56Q9NY93 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
DDX56Q9NY93 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
DDX56Q9NY93 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
DDX56Q9NY93 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
DDX56Q9NY93 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.53■■□□□ 1.04
DDX56Q9NY93 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.53■■□□□ 1.04
DDX56Q9NY93 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
DDX56Q9NY93 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.53■■□□□ 1.04
DDX56Q9NY93 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.53■■□□□ 1.04
DDX56Q9NY93 AC073314.1-201ENST00000568729 2216 ntBASIC21.53■■□□□ 1.04
DDX56Q9NY93 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
DDX56Q9NY93 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
DDX56Q9NY93 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
DDX56Q9NY93 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
DDX56Q9NY93 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
DDX56Q9NY93 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.52■■□□□ 1.04
DDX56Q9NY93 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC21.52■■□□□ 1.04
DDX56Q9NY93 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
DDX56Q9NY93 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
DDX56Q9NY93 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.52■■□□□ 1.04
DDX56Q9NY93 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms