Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
BLOC1S4Q9NUP1 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC23.12■■□□□ 1.29
BLOC1S4Q9NUP1 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
BLOC1S4Q9NUP1 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
BLOC1S4Q9NUP1 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
BLOC1S4Q9NUP1 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
BLOC1S4Q9NUP1 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC23.11■■□□□ 1.29
BLOC1S4Q9NUP1 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC23.11■■□□□ 1.29
BLOC1S4Q9NUP1 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
BLOC1S4Q9NUP1 PTPA-214ENST00000423100 988 ntTSL 2 BASIC23.11■■□□□ 1.29
BLOC1S4Q9NUP1 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
BLOC1S4Q9NUP1 AC010536.3-201ENST00000620306 533 ntBASIC23.11■■□□□ 1.29
BLOC1S4Q9NUP1 AC092437.1-201ENST00000624794 1048 ntBASIC23.11■■□□□ 1.29
BLOC1S4Q9NUP1 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
BLOC1S4Q9NUP1 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
BLOC1S4Q9NUP1 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
BLOC1S4Q9NUP1 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
BLOC1S4Q9NUP1 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC23.11■■□□□ 1.29
BLOC1S4Q9NUP1 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
BLOC1S4Q9NUP1 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
BLOC1S4Q9NUP1 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC23.1■■□□□ 1.29
BLOC1S4Q9NUP1 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC23.1■■□□□ 1.29
BLOC1S4Q9NUP1 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
BLOC1S4Q9NUP1 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
BLOC1S4Q9NUP1 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC23.1■■□□□ 1.29
BLOC1S4Q9NUP1 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC23.1■■□□□ 1.29
BLOC1S4Q9NUP1 KRT18P11-201ENST00000435214 1283 ntBASIC23.1■■□□□ 1.29
BLOC1S4Q9NUP1 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
BLOC1S4Q9NUP1 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC23.1■■□□□ 1.29
BLOC1S4Q9NUP1 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
BLOC1S4Q9NUP1 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
BLOC1S4Q9NUP1 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
BLOC1S4Q9NUP1 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 CD44-222ENST00000526025 1052 ntTSL 2 BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 AC011767.1-201ENST00000617410 1153 ntBASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC23.09■■□□□ 1.29
BLOC1S4Q9NUP1 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC23.08■■□□□ 1.29
BLOC1S4Q9NUP1 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
BLOC1S4Q9NUP1 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC23.08■■□□□ 1.29
BLOC1S4Q9NUP1 TERF1P5-201ENST00000477545 1207 ntBASIC23.08■■□□□ 1.29
BLOC1S4Q9NUP1 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC23.08■■□□□ 1.29
BLOC1S4Q9NUP1 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC23.08■■□□□ 1.29
BLOC1S4Q9NUP1 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC23.08■■□□□ 1.29
BLOC1S4Q9NUP1 IKBKGP1-201ENST00000612193 1073 ntBASIC23.08■■□□□ 1.29
BLOC1S4Q9NUP1 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
BLOC1S4Q9NUP1 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
BLOC1S4Q9NUP1 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.28
BLOC1S4Q9NUP1 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC23.08■■□□□ 1.28
BLOC1S4Q9NUP1 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC23.08■■□□□ 1.28
BLOC1S4Q9NUP1 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC23.07■■□□□ 1.28
BLOC1S4Q9NUP1 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
BLOC1S4Q9NUP1 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
BLOC1S4Q9NUP1 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
BLOC1S4Q9NUP1 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
BLOC1S4Q9NUP1 AC016769.1-201ENST00000409132 1010 ntBASIC23.07■■□□□ 1.28
BLOC1S4Q9NUP1 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
BLOC1S4Q9NUP1 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
BLOC1S4Q9NUP1 DUX4L16-201ENST00000555130 1264 ntBASIC23.07■■□□□ 1.28
BLOC1S4Q9NUP1 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
BLOC1S4Q9NUP1 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
BLOC1S4Q9NUP1 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
BLOC1S4Q9NUP1 AC116050.2-201ENST00000612102 1779 ntBASIC23.06■■□□□ 1.28
BLOC1S4Q9NUP1 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC23.06■■□□□ 1.28
BLOC1S4Q9NUP1 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
BLOC1S4Q9NUP1 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
BLOC1S4Q9NUP1 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC23.06■■□□□ 1.28
BLOC1S4Q9NUP1 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC23.06■■□□□ 1.28
BLOC1S4Q9NUP1 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
BLOC1S4Q9NUP1 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
BLOC1S4Q9NUP1 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
BLOC1S4Q9NUP1 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC23.06■■□□□ 1.28
BLOC1S4Q9NUP1 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
BLOC1S4Q9NUP1 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
BLOC1S4Q9NUP1 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
BLOC1S4Q9NUP1 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC23.06■■□□□ 1.28
BLOC1S4Q9NUP1 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
BLOC1S4Q9NUP1 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC23.06■■□□□ 1.28
BLOC1S4Q9NUP1 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
BLOC1S4Q9NUP1 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
BLOC1S4Q9NUP1 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
BLOC1S4Q9NUP1 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
BLOC1S4Q9NUP1 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC23.05■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms