Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM56Q9BRZ2 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM56Q9BRZ2 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM56Q9BRZ2 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.08■□□□□ 0.97
TRIM56Q9BRZ2 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM56Q9BRZ2 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
TRIM56Q9BRZ2 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM56Q9BRZ2 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.08■□□□□ 0.97
TRIM56Q9BRZ2 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.08■□□□□ 0.97
TRIM56Q9BRZ2 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.08■□□□□ 0.97
TRIM56Q9BRZ2 AC142381.2-201ENST00000566120 298 ntBASIC21.08■□□□□ 0.97
TRIM56Q9BRZ2 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM56Q9BRZ2 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.08■□□□□ 0.96
TRIM56Q9BRZ2 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
TRIM56Q9BRZ2 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM56Q9BRZ2 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM56Q9BRZ2 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM56Q9BRZ2 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM56Q9BRZ2 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM56Q9BRZ2 AC073314.1-201ENST00000568729 2216 ntBASIC21.08■□□□□ 0.96
TRIM56Q9BRZ2 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM56Q9BRZ2 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 AC006128.1-201ENST00000624704 1661 ntBASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 LINC01521-201ENST00000504184 1943 ntBASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
TRIM56Q9BRZ2 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 AC061975.6-201ENST00000579045 1553 ntBASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 AL391422.3-201ENST00000603791 2761 ntBASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM56Q9BRZ2 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM56Q9BRZ2 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM56Q9BRZ2 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM56Q9BRZ2 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM56Q9BRZ2 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM56Q9BRZ2 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM56Q9BRZ2 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM56Q9BRZ2 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM56Q9BRZ2 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM56Q9BRZ2 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM56Q9BRZ2 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
TRIM56Q9BRZ2 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM56Q9BRZ2 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM56Q9BRZ2 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.04■□□□□ 0.96
TRIM56Q9BRZ2 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM56Q9BRZ2 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM56Q9BRZ2 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.04■□□□□ 0.96
TRIM56Q9BRZ2 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
TRIM56Q9BRZ2 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.04■□□□□ 0.96
TRIM56Q9BRZ2 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.04■□□□□ 0.96
TRIM56Q9BRZ2 EEF1DP3-203ENST00000566025 782 ntBASIC21.04■□□□□ 0.96
TRIM56Q9BRZ2 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.04■□□□□ 0.96
TRIM56Q9BRZ2 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.04■□□□□ 0.96
TRIM56Q9BRZ2 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM56Q9BRZ2 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
TRIM56Q9BRZ2 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
TRIM56Q9BRZ2 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM56Q9BRZ2 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM56Q9BRZ2 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.04■□□□□ 0.96
TRIM56Q9BRZ2 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TRIM56Q9BRZ2 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM56Q9BRZ2 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
TRIM56Q9BRZ2 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.03■□□□□ 0.96
TRIM56Q9BRZ2 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms