Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS13AQ96RL7 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS13AQ96RL7 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
VPS13AQ96RL7 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS13AQ96RL7 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
VPS13AQ96RL7 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.72■□□□□ 0.91
VPS13AQ96RL7 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS13AQ96RL7 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.72■□□□□ 0.91
VPS13AQ96RL7 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VPS13AQ96RL7 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.72■□□□□ 0.91
VPS13AQ96RL7 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.72■□□□□ 0.91
VPS13AQ96RL7 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.72■□□□□ 0.91
VPS13AQ96RL7 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VPS13AQ96RL7 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
VPS13AQ96RL7 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.71■□□□□ 0.91
VPS13AQ96RL7 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.71■□□□□ 0.91
VPS13AQ96RL7 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
VPS13AQ96RL7 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.71■□□□□ 0.91
VPS13AQ96RL7 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.71■□□□□ 0.91
VPS13AQ96RL7 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.71■□□□□ 0.91
VPS13AQ96RL7 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
VPS13AQ96RL7 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS13AQ96RL7 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
VPS13AQ96RL7 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VPS13AQ96RL7 TERF1P1-201ENST00000311003 1181 ntBASIC20.71■□□□□ 0.91
VPS13AQ96RL7 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS13AQ96RL7 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VPS13AQ96RL7 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
VPS13AQ96RL7 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS13AQ96RL7 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.7■□□□□ 0.9
VPS13AQ96RL7 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.7■□□□□ 0.9
VPS13AQ96RL7 AC005521.1-201ENST00000393351 872 ntBASIC20.7■□□□□ 0.9
VPS13AQ96RL7 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS13AQ96RL7 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS13AQ96RL7 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.7■□□□□ 0.9
VPS13AQ96RL7 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS13AQ96RL7 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS13AQ96RL7 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.7■□□□□ 0.9
VPS13AQ96RL7 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
VPS13AQ96RL7 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.7■□□□□ 0.9
VPS13AQ96RL7 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.7■□□□□ 0.9
VPS13AQ96RL7 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 AC026471.6-201ENST00000622954 1905 ntBASIC20.69■□□□□ 0.9
VPS13AQ96RL7 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 AC092068.2-201ENST00000590491 1708 ntBASIC20.69■□□□□ 0.9
VPS13AQ96RL7 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
VPS13AQ96RL7 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.69■□□□□ 0.9
VPS13AQ96RL7 AC113410.3-201ENST00000623366 203 ntBASIC20.69■□□□□ 0.9
VPS13AQ96RL7 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS13AQ96RL7 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS13AQ96RL7 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS13AQ96RL7 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS13AQ96RL7 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
VPS13AQ96RL7 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC20.68■□□□□ 0.9
VPS13AQ96RL7 AL034346.1-201ENST00000568244 1277 ntBASIC20.68■□□□□ 0.9
VPS13AQ96RL7 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.68■□□□□ 0.9
VPS13AQ96RL7 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS13AQ96RL7 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS13AQ96RL7 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.68■□□□□ 0.9
VPS13AQ96RL7 USF2-205ENST00000594064 1179 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS13AQ96RL7 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.68■□□□□ 0.9
VPS13AQ96RL7 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS13AQ96RL7 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms