Protein–RNA interactions for Protein: Q96JI7

SPG11, Spatacsin, humanhuman

Predictions only

Length 2,443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11Q96JI7 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SPG11Q96JI7 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
SPG11Q96JI7 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
SPG11Q96JI7 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SPG11Q96JI7 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SPG11Q96JI7 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SPG11Q96JI7 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SPG11Q96JI7 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SPG11Q96JI7 RARRES2P10-201ENST00000564312 460 ntBASIC17.68■□□□□ 0.42
SPG11Q96JI7 AC124016.1-201ENST00000609552 612 ntBASIC17.68■□□□□ 0.42
SPG11Q96JI7 AC120498.8-201ENST00000614275 531 ntBASIC17.68■□□□□ 0.42
SPG11Q96JI7 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SPG11Q96JI7 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.67■□□□□ 0.42
SPG11Q96JI7 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SPG11Q96JI7 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SPG11Q96JI7 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.67■□□□□ 0.42
SPG11Q96JI7 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SPG11Q96JI7 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SPG11Q96JI7 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SPG11Q96JI7 C11orf96-202ENST00000528572 1834 ntBASIC17.67■□□□□ 0.42
SPG11Q96JI7 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SPG11Q96JI7 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SPG11Q96JI7 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.67■□□□□ 0.42
SPG11Q96JI7 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.67■□□□□ 0.42
SPG11Q96JI7 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SPG11Q96JI7 AL023875.1-201ENST00000640777 796 ntBASIC17.67■□□□□ 0.42
SPG11Q96JI7 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SPG11Q96JI7 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SPG11Q96JI7 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC17.66■□□□□ 0.42
SPG11Q96JI7 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SPG11Q96JI7 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
SPG11Q96JI7 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.66■□□□□ 0.42
SPG11Q96JI7 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SPG11Q96JI7 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SPG11Q96JI7 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SPG11Q96JI7 AC245052.3-201ENST00000450182 901 ntBASIC17.66■□□□□ 0.42
SPG11Q96JI7 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SPG11Q96JI7 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.66■□□□□ 0.42
SPG11Q96JI7 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.66■□□□□ 0.42
SPG11Q96JI7 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC17.66■□□□□ 0.42
SPG11Q96JI7 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
SPG11Q96JI7 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
SPG11Q96JI7 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
SPG11Q96JI7 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SPG11Q96JI7 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
SPG11Q96JI7 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.65■□□□□ 0.42
SPG11Q96JI7 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SPG11Q96JI7 KRT18P35-201ENST00000510488 1269 ntBASIC17.65■□□□□ 0.42
SPG11Q96JI7 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SPG11Q96JI7 AP003071.4-201ENST00000562276 1284 ntBASIC17.65■□□□□ 0.42
SPG11Q96JI7 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SPG11Q96JI7 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SPG11Q96JI7 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SPG11Q96JI7 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SPG11Q96JI7 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SPG11Q96JI7 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SPG11Q96JI7 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
SPG11Q96JI7 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
SPG11Q96JI7 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
SPG11Q96JI7 C2orf69P4-201ENST00000565394 541 ntBASIC17.64■□□□□ 0.42
SPG11Q96JI7 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.64■□□□□ 0.42
SPG11Q96JI7 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.64■□□□□ 0.42
SPG11Q96JI7 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
SPG11Q96JI7 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC17.64■□□□□ 0.42
SPG11Q96JI7 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.64■□□□□ 0.42
SPG11Q96JI7 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SPG11Q96JI7 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SPG11Q96JI7 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC17.64■□□□□ 0.41
SPG11Q96JI7 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SPG11Q96JI7 AC139530.1-201ENST00000575312 1977 ntBASIC17.64■□□□□ 0.41
SPG11Q96JI7 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
SPG11Q96JI7 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
SPG11Q96JI7 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
SPG11Q96JI7 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
SPG11Q96JI7 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SPG11Q96JI7 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
SPG11Q96JI7 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC17.64■□□□□ 0.41
SPG11Q96JI7 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC17.64■□□□□ 0.41
SPG11Q96JI7 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SPG11Q96JI7 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SPG11Q96JI7 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SPG11Q96JI7 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.63■□□□□ 0.41
SPG11Q96JI7 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.63■□□□□ 0.41
SPG11Q96JI7 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.63■□□□□ 0.41
SPG11Q96JI7 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SPG11Q96JI7 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SPG11Q96JI7 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SPG11Q96JI7 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.63■□□□□ 0.41
SPG11Q96JI7 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SPG11Q96JI7 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SPG11Q96JI7 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC17.63■□□□□ 0.41
SPG11Q96JI7 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SPG11Q96JI7 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.63■□□□□ 0.41
SPG11Q96JI7 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SPG11Q96JI7 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SPG11Q96JI7 CDV3P1-201ENST00000471403 739 ntBASIC17.63■□□□□ 0.41
SPG11Q96JI7 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.63■□□□□ 0.41
SPG11Q96JI7 FAM21FP-204ENST00000608637 956 ntBASIC17.63■□□□□ 0.41
SPG11Q96JI7 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.63■□□□□ 0.41
SPG11Q96JI7 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms