Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LMX1AQ8TE12 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LMX1AQ8TE12 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LMX1AQ8TE12 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LMX1AQ8TE12 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LMX1AQ8TE12 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LMX1AQ8TE12 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
LMX1AQ8TE12 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
LMX1AQ8TE12 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LMX1AQ8TE12 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LMX1AQ8TE12 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LMX1AQ8TE12 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LMX1AQ8TE12 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.25■□□□□ 0.83
LMX1AQ8TE12 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
LMX1AQ8TE12 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.25■□□□□ 0.83
LMX1AQ8TE12 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LMX1AQ8TE12 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LMX1AQ8TE12 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LMX1AQ8TE12 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.24■□□□□ 0.83
LMX1AQ8TE12 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LMX1AQ8TE12 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
LMX1AQ8TE12 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
LMX1AQ8TE12 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LMX1AQ8TE12 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LMX1AQ8TE12 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LMX1AQ8TE12 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.24■□□□□ 0.83
LMX1AQ8TE12 AC128676.1-201ENST00000454392 318 ntBASIC20.24■□□□□ 0.83
LMX1AQ8TE12 AC026366.1-201ENST00000488803 879 ntBASIC20.24■□□□□ 0.83
LMX1AQ8TE12 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LMX1AQ8TE12 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.24■□□□□ 0.83
LMX1AQ8TE12 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LMX1AQ8TE12 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
LMX1AQ8TE12 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LMX1AQ8TE12 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.23■□□□□ 0.83
LMX1AQ8TE12 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LMX1AQ8TE12 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
LMX1AQ8TE12 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LMX1AQ8TE12 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LMX1AQ8TE12 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LMX1AQ8TE12 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
LMX1AQ8TE12 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.23■□□□□ 0.83
LMX1AQ8TE12 AC098590.1-201ENST00000468126 897 ntBASIC20.23■□□□□ 0.83
LMX1AQ8TE12 RPS2P52-201ENST00000469610 820 ntBASIC20.23■□□□□ 0.83
LMX1AQ8TE12 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.23■□□□□ 0.83
LMX1AQ8TE12 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LMX1AQ8TE12 AP003097.1-201ENST00000530657 1135 ntBASIC20.23■□□□□ 0.83
LMX1AQ8TE12 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LMX1AQ8TE12 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LMX1AQ8TE12 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.23■□□□□ 0.83
LMX1AQ8TE12 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LMX1AQ8TE12 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.22■□□□□ 0.83
LMX1AQ8TE12 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
LMX1AQ8TE12 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LMX1AQ8TE12 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LMX1AQ8TE12 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.22■□□□□ 0.83
LMX1AQ8TE12 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.22■□□□□ 0.83
LMX1AQ8TE12 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LMX1AQ8TE12 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LMX1AQ8TE12 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.22■□□□□ 0.83
LMX1AQ8TE12 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.22■□□□□ 0.83
LMX1AQ8TE12 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LMX1AQ8TE12 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.22■□□□□ 0.83
LMX1AQ8TE12 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.22■□□□□ 0.83
LMX1AQ8TE12 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
LMX1AQ8TE12 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.22■□□□□ 0.83
LMX1AQ8TE12 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 AC116050.2-201ENST00000612102 1779 ntBASIC20.21■□□□□ 0.83
LMX1AQ8TE12 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 AL158047.1-201ENST00000445918 881 ntBASIC20.21■□□□□ 0.83
LMX1AQ8TE12 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 AC060766.5-201ENST00000590539 871 ntBASIC20.21■□□□□ 0.83
LMX1AQ8TE12 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 CYP21A1P-202ENST00000354927 1481 ntBASIC20.21■□□□□ 0.83
LMX1AQ8TE12 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
LMX1AQ8TE12 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LMX1AQ8TE12 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.2■□□□□ 0.82
LMX1AQ8TE12 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LMX1AQ8TE12 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LMX1AQ8TE12 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LMX1AQ8TE12 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms