Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 KRT18P6-201ENST00000555540 1265 ntBASIC19.24■□□□□ 0.67
BEST3Q8N1M1 AL162412.1-201ENST00000567129 965 ntBASIC19.24■□□□□ 0.67
BEST3Q8N1M1 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.24■□□□□ 0.67
BEST3Q8N1M1 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
BEST3Q8N1M1 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
BEST3Q8N1M1 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.24■□□□□ 0.67
BEST3Q8N1M1 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.24■□□□□ 0.67
BEST3Q8N1M1 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
BEST3Q8N1M1 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BEST3Q8N1M1 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
BEST3Q8N1M1 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
BEST3Q8N1M1 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BEST3Q8N1M1 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.23■□□□□ 0.67
BEST3Q8N1M1 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BEST3Q8N1M1 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BEST3Q8N1M1 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BEST3Q8N1M1 AC245052.3-201ENST00000450182 901 ntBASIC19.23■□□□□ 0.67
BEST3Q8N1M1 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.23■□□□□ 0.67
BEST3Q8N1M1 MIR4758-201ENST00000577688 71 ntBASIC19.23■□□□□ 0.67
BEST3Q8N1M1 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
BEST3Q8N1M1 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.23■□□□□ 0.67
BEST3Q8N1M1 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.23■□□□□ 0.67
BEST3Q8N1M1 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
BEST3Q8N1M1 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
BEST3Q8N1M1 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
BEST3Q8N1M1 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
BEST3Q8N1M1 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
BEST3Q8N1M1 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.22■□□□□ 0.67
BEST3Q8N1M1 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
BEST3Q8N1M1 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
BEST3Q8N1M1 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
BEST3Q8N1M1 AC073210.2-201ENST00000430369 194 ntBASIC19.22■□□□□ 0.67
BEST3Q8N1M1 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.22■□□□□ 0.67
BEST3Q8N1M1 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.22■□□□□ 0.67
BEST3Q8N1M1 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
BEST3Q8N1M1 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
BEST3Q8N1M1 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
BEST3Q8N1M1 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.22■□□□□ 0.67
BEST3Q8N1M1 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
BEST3Q8N1M1 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
BEST3Q8N1M1 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
BEST3Q8N1M1 ABHD17AP1-201ENST00000358206 933 ntBASIC19.21■□□□□ 0.67
BEST3Q8N1M1 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.21■□□□□ 0.67
BEST3Q8N1M1 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
BEST3Q8N1M1 BX276092.2-201ENST00000417668 665 ntBASIC19.21■□□□□ 0.67
BEST3Q8N1M1 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
BEST3Q8N1M1 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.21■□□□□ 0.67
BEST3Q8N1M1 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.21■□□□□ 0.67
BEST3Q8N1M1 RARRES2P4-201ENST00000514074 484 ntBASIC19.21■□□□□ 0.67
BEST3Q8N1M1 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.21■□□□□ 0.67
BEST3Q8N1M1 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
BEST3Q8N1M1 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
BEST3Q8N1M1 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
BEST3Q8N1M1 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.21■□□□□ 0.67
BEST3Q8N1M1 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
BEST3Q8N1M1 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
BEST3Q8N1M1 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
BEST3Q8N1M1 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
BEST3Q8N1M1 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
BEST3Q8N1M1 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
BEST3Q8N1M1 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
BEST3Q8N1M1 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.2■□□□□ 0.66
BEST3Q8N1M1 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.2■□□□□ 0.66
BEST3Q8N1M1 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
BEST3Q8N1M1 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
BEST3Q8N1M1 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC19.2■□□□□ 0.66
BEST3Q8N1M1 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.2■□□□□ 0.66
BEST3Q8N1M1 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.2■□□□□ 0.66
BEST3Q8N1M1 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
BEST3Q8N1M1 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
BEST3Q8N1M1 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.2■□□□□ 0.66
BEST3Q8N1M1 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
BEST3Q8N1M1 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
BEST3Q8N1M1 AC007375.3-201ENST00000600936 2314 ntBASIC19.19■□□□□ 0.66
BEST3Q8N1M1 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.19■□□□□ 0.66
BEST3Q8N1M1 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.19■□□□□ 0.66
BEST3Q8N1M1 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BEST3Q8N1M1 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BEST3Q8N1M1 AC091799.1-201ENST00000422823 811 ntBASIC19.19■□□□□ 0.66
BEST3Q8N1M1 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.19■□□□□ 0.66
BEST3Q8N1M1 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.19■□□□□ 0.66
BEST3Q8N1M1 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BEST3Q8N1M1 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
BEST3Q8N1M1 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
BEST3Q8N1M1 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
BEST3Q8N1M1 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.19■□□□□ 0.66
BEST3Q8N1M1 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.19■□□□□ 0.66
BEST3Q8N1M1 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
BEST3Q8N1M1 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BEST3Q8N1M1 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BEST3Q8N1M1 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
BEST3Q8N1M1 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.19■□□□□ 0.66
BEST3Q8N1M1 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.19■□□□□ 0.66
BEST3Q8N1M1 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
BEST3Q8N1M1 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
BEST3Q8N1M1 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BEST3Q8N1M1 AC010980.2-201ENST00000587099 1412 ntBASIC19.18■□□□□ 0.66
BEST3Q8N1M1 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BEST3Q8N1M1 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
BEST3Q8N1M1 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms