Protein–RNA interactions for Protein: Q07955

SRSF1, Serine/arginine-rich splicing factor 1, humanhuman

Known RBP eCLIP

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF1Q07955 WDR6-204ENST00000420783 3656 ntTSL 1 (best)9.48□□□□□ -0.892e-6■■■□□ 16.4
SRSF1Q07955 WDR6-221ENST00000610967 4259 ntTSL 1 (best) BASIC9.41□□□□□ -0.92e-6■■■□□ 16.4
SRSF1Q07955 WDR6-220ENST00000608424 4070 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.962e-6■■■□□ 16.4
SRSF1Q07955 WDR6-208ENST00000452875 3916 ntTSL 1 (best)8.91□□□□□ -0.982e-6■■■□□ 16.4
SRSF1Q07955 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC14.32□□□□□ -0.127e-11■■■□□ 16.3
SRSF1Q07955 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.477e-11■■■□□ 16.3
SRSF1Q07955 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC10.29□□□□□ -0.767e-11■■■□□ 16.3
SRSF1Q07955 PRPF4B-205ENST00000480058 6775 ntTSL 1 (best)5.16□□□□□ -1.581e-8■■■□□ 16.3
SRSF1Q07955 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.661e-8■■■□□ 16.3
SRSF1Q07955 MSH5-205ENST00000395853 2704 ntTSL 2 BASIC7.54□□□□□ -1.28e-7■■■□□ 16.3
SRSF1Q07955 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC13.31□□□□□ -0.285e-7■■■□□ 16.3
SRSF1Q07955 CDC45-201ENST00000263201 1976 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.635e-7■■■□□ 16.3
SRSF1Q07955 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC11□□□□□ -0.655e-7■■■□□ 16.3
SRSF1Q07955 CDC45-203ENST00000407835 2090 ntAPPRIS P1 TSL 5 BASIC10.12□□□□□ -0.795e-7■■■□□ 16.3
SRSF1Q07955 MICALL2-203ENST00000460198 533 ntTSL 316.67■□□□□ 0.261e-9■■■□□ 16.3
SRSF1Q07955 EIF4G2-207ENST00000525995 592 ntTSL 420.19■□□□□ 0.823e-6■■■□□ 16.3
SRSF1Q07955 EIF4G2-203ENST00000524932 1286 ntTSL 519.87■□□□□ 0.773e-6■■■□□ 16.3
SRSF1Q07955 EIF4G2-210ENST00000527419 571 ntTSL 515.52■□□□□ 0.083e-6■■■□□ 16.3
SRSF1Q07955 EIF4G2-228ENST00000534246 523 ntTSL 214.41□□□□□ -0.13e-6■■■□□ 16.3
SRSF1Q07955 EIF4G2-216ENST00000530702 563 ntTSL 214.04□□□□□ -0.163e-6■■■□□ 16.3
SRSF1Q07955 EIF4G2-219ENST00000531507 591 ntTSL 510.36□□□□□ -0.753e-6■■■□□ 16.3
SRSF1Q07955 EIF4G2-214ENST00000530211 591 ntTSL 210.36□□□□□ -0.753e-6■■■□□ 16.3
SRSF1Q07955 EIF4G2-226ENST00000532570 573 ntTSL 510.17□□□□□ -0.783e-6■■■□□ 16.3
SRSF1Q07955 EIF4G2-206ENST00000525972 584 ntTSL 27.69□□□□□ -1.183e-6■■■□□ 16.3
SRSF1Q07955 EIF4G2-201ENST00000339995 3978 ntAPPRIS ALT2 TSL 1 (best) BASIC7.31□□□□□ -1.243e-6■■■□□ 16.3
SRSF1Q07955 EIF4G2-212ENST00000528562 601 ntTSL 47.03□□□□□ -1.283e-6■■■□□ 16.3
SRSF1Q07955 EIF4G2-202ENST00000396525 3346 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.373e-6■■■□□ 16.3
SRSF1Q07955 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC11.14□□□□□ -0.635e-6■■■□□ 16.3
SRSF1Q07955 MTF2-213ENST00000540243 3845 ntTSL 2 BASIC7.25□□□□□ -1.255e-6■■■□□ 16.3
SRSF1Q07955 MTF2-214ENST00000545708 4046 ntTSL 2 BASIC7.1□□□□□ -1.275e-6■■■□□ 16.3
SRSF1Q07955 MTF2-201ENST00000370298 4125 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.315e-6■■■□□ 16.3
SRSF1Q07955 MTF2-205ENST00000471953 1937 ntTSL 25.47□□□□□ -1.535e-6■■■□□ 16.3
SRSF1Q07955 MTF2-203ENST00000467953 1870 ntTSL 1 (best)5.38□□□□□ -1.555e-6■■■□□ 16.3
SRSF1Q07955 MAD1L1-206ENST00000429625 750 ntTSL 513.9□□□□□ -0.181e-8■■■□□ 16.3
SRSF1Q07955 MYO19-204ENST00000610992 5743 ntTSL 211.42□□□□□ -0.581e-7■■■□□ 16.2
SRSF1Q07955 MYO19-203ENST00000610930 3271 ntTSL 5 BASIC9.76□□□□□ -0.851e-7■■■□□ 16.2
SRSF1Q07955 MYO19-213ENST00000614623 4054 ntAPPRIS P1 TSL 2 BASIC9.56□□□□□ -0.881e-7■■■□□ 16.2
SRSF1Q07955 MYO19-226ENST00000621550 4299 ntTSL 59.55□□□□□ -0.881e-7■■■□□ 16.2
SRSF1Q07955 ZKSCAN1-202ENST00000426572 2011 ntTSL 2 BASIC10.75□□□□□ -0.691e-12■■■□□ 16.2
SRSF1Q07955 ZKSCAN1-205ENST00000535170 8758 ntTSL 2 BASIC9.47□□□□□ -0.891e-12■■■□□ 16.2
SRSF1Q07955 ZKSCAN1-206ENST00000620510 9192 ntTSL 5 BASIC9.04□□□□□ -0.961e-12■■■□□ 16.2
SRSF1Q07955 ZKSCAN1-201ENST00000324306 9418 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.131e-12■■■□□ 16.2
SRSF1Q07955 CNOT9-204ENST00000432877 581 ntTSL 317.53■□□□□ 0.42e-9■■■□□ 16.2
SRSF1Q07955 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.29■□□□□ 0.362e-9■■■□□ 16.2
SRSF1Q07955 CNOT9-205ENST00000433439 567 ntTSL 413.64□□□□□ -0.232e-9■■■□□ 16.2
SRSF1Q07955 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.542e-9■■■□□ 16.2
SRSF1Q07955 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.592e-9■■■□□ 16.2
SRSF1Q07955 USP36-210ENST00000588086 3187 ntAPPRIS ALT2 TSL 1 (best)11.11□□□□□ -0.632e-9■■■□□ 16.2
SRSF1Q07955 CNOT9-202ENST00000295701 1126 ntTSL 1 (best) BASIC9.25□□□□□ -0.932e-9■■■□□ 16.2
SRSF1Q07955 CNOT9-207ENST00000489687 288 ntTSL 35.56□□□□□ -1.522e-9■■■□□ 16.2
SRSF1Q07955 TOP3B-203ENST00000424393 824 ntTSL 510.25□□□□□ -0.778e-10■■■□□ 16.2
SRSF1Q07955 LZTR1-214ENST00000492480 695 ntTSL 317.39■□□□□ 0.375e-7■■■□□ 16.2
SRSF1Q07955 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.383e-7■■■□□ 16.2
SRSF1Q07955 LZTR1-211ENST00000479606 3442 ntTSL 210.9□□□□□ -0.663e-7■■■□□ 16.2
SRSF1Q07955 NT5C-206ENST00000579023 726 ntTSL 321.47■■□□□ 1.033e-8■■■□□ 16.2
SRSF1Q07955 NT5C-213ENST00000583655 1315 ntTSL 220.68■□□□□ 0.93e-8■■■□□ 16.2
SRSF1Q07955 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.893e-8■■■□□ 16.2
SRSF1Q07955 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.13■□□□□ 0.653e-8■■■□□ 16.2
SRSF1Q07955 NT5C-209ENST00000580758 958 ntTSL 218.15■□□□□ 0.53e-8■■■□□ 16.2
SRSF1Q07955 NT5C-207ENST00000579082 503 ntTSL 317.94■□□□□ 0.463e-8■■■□□ 16.2
SRSF1Q07955 NT5C-205ENST00000578407 720 ntTSL 317.47■□□□□ 0.393e-8■■■□□ 16.2
SRSF1Q07955 NT5C-203ENST00000578095 648 ntTSL 314.34□□□□□ -0.113e-8■■■□□ 16.2
SRSF1Q07955 UBR4-202ENST00000375224 3475 ntTSL 2 BASIC6.39□□□□□ -1.391e-9■■■□□ 16.2
SRSF1Q07955 DDX55-202ENST00000354291 1004 ntTSL 516.62■□□□□ 0.259e-8■■■□□ 16.2
SRSF1Q07955 DDX55-212ENST00000544738 956 ntTSL 516.62■□□□□ 0.259e-8■■■□□ 16.2
SRSF1Q07955 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC16.22■□□□□ 0.199e-8■■■□□ 16.2
SRSF1Q07955 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.499e-8■■■□□ 16.2
SRSF1Q07955 DDX55-209ENST00000542286 2767 ntTSL 211.16□□□□□ -0.629e-8■■■□□ 16.2
SRSF1Q07955 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.42■□□□□ 0.221e-12■■■□□ 16.2
SRSF1Q07955 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.481e-12■■■□□ 16.2
SRSF1Q07955 HSP90B1-203ENST00000548462 3032 ntTSL 28.88□□□□□ -0.991e-12■■■□□ 16.2
SRSF1Q07955 CDK5RAP3-233ENST00000584186 482 ntTSL 312.93□□□□□ -0.341e-6■■■□□ 16.2
SRSF1Q07955 BCL6-210ENST00000496823 1138 ntTSL 312.55□□□□□ -0.46e-7■■■□□ 16.2
SRSF1Q07955 BCL6-211ENST00000621333 3399 ntTSL 5 BASIC9.85□□□□□ -0.836e-7■■■□□ 16.2
SRSF1Q07955 BCL6-202ENST00000406870 3569 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.976e-7■■■□□ 16.2
SRSF1Q07955 BCL6-209ENST00000480458 342 ntTSL 57.38□□□□□ -1.236e-7■■■□□ 16.2
SRSF1Q07955 BCL6-207ENST00000470319 526 ntTSL 43.36□□□□□ -1.876e-7■■■□□ 16.2
SRSF1Q07955 SPHK1-204ENST00000587167 456 ntTSL 418.33■□□□□ 0.529e-12■■■□□ 16.2
SRSF1Q07955 MYO18B-202ENST00000407587 8090 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.745e-7■■■□□ 16.2
SRSF1Q07955 MYO18B-207ENST00000539302 7774 ntTSL 1 (best)9.99□□□□□ -0.815e-7■■■□□ 16.2
SRSF1Q07955 MYO18B-201ENST00000335473 8565 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.815e-7■■■□□ 16.2
SRSF1Q07955 MYO18B-205ENST00000536101 8051 ntAPPRIS P3 TSL 1 (best) BASIC9.29□□□□□ -0.925e-7■■■□□ 16.2
SRSF1Q07955 IST1-205ENST00000439924 1841 ntTSL 511.28□□□□□ -0.62e-7■■■□□ 16.1
SRSF1Q07955 IST1-206ENST00000456820 2031 ntTSL 59.73□□□□□ -0.852e-7■■■□□ 16.1
SRSF1Q07955 TTLL3-218ENST00000443148 2031 ntTSL 213.1□□□□□ -0.313e-7■■■□□ 16.1
SRSF1Q07955 TTLL3-201ENST00000310252 1561 ntAPPRIS ALT2 TSL 1 (best)10.05□□□□□ -0.83e-7■■■□□ 16.1
SRSF1Q07955 TTLL3-232ENST00000496526 5282 ntTSL 28.99□□□□□ -0.973e-7■■■□□ 16.1
SRSF1Q07955 TAF1-207ENST00000461764 1841 ntTSL 510.38□□□□□ -0.755e-7■■■□□ 16.1
SRSF1Q07955 TAF1-218ENST00000485087 1738 ntTSL 510.16□□□□□ -0.785e-7■■■□□ 16.1
SRSF1Q07955 TAF1-208ENST00000462588 1826 ntTSL 1 (best)8.76□□□□□ -1.015e-7■■■□□ 16.1
SRSF1Q07955 TAF1-215ENST00000482544 768 ntTSL 38.76□□□□□ -1.015e-7■■■□□ 16.1
SRSF1Q07955 TAF1-211ENST00000468167 1767 ntTSL 58.54□□□□□ -1.045e-7■■■□□ 16.1
SRSF1Q07955 TAF1-210ENST00000467309 1313 ntTSL 1 (best)7.85□□□□□ -1.155e-7■■■□□ 16.1
SRSF1Q07955 TAF1-202ENST00000373775 2199 ntTSL 57.71□□□□□ -1.175e-7■■■□□ 16.1
SRSF1Q07955 TAF1-205ENST00000437147 2295 ntTSL 1 (best)7.43□□□□□ -1.225e-7■■■□□ 16.1
SRSF1Q07955 TAF1-201ENST00000276072 5692 ntAPPRIS P3 TSL 5 BASIC7.08□□□□□ -1.285e-7■■■□□ 16.1
SRSF1Q07955 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.355e-7■■■□□ 16.1
SRSF1Q07955 TAF1-204ENST00000423759 7722 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.365e-7■■■□□ 16.1
SRSF1Q07955 TAF1-219ENST00000492404 1249 ntTSL 56.53□□□□□ -1.365e-7■■■□□ 16.1
SRSF1Q07955 ELP2-221ENST00000542824 2288 ntTSL 1 (best) BASIC10.78□□□□□ -0.682e-6■■■□□ 16.1
Retrieved 100 of 14,836 protein–RNA pairs in 132.1 ms