Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC026471.5-201ENST00000615068 467 ntBASIC15.01□□□□□ -0.01
COL7A1Q02388 KRT8P9-201ENST00000558927 1449 ntBASIC15.01□□□□□ -0.01
COL7A1Q02388 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL7A1Q02388 NFE2L3P1-201ENST00000588207 1959 ntBASIC15.01□□□□□ -0.01
COL7A1Q02388 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL7A1Q02388 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
COL7A1Q02388 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC15.01□□□□□ -0.01
COL7A1Q02388 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC15.01□□□□□ -0.01
COL7A1Q02388 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC15.01□□□□□ -0.01
COL7A1Q02388 AC026471.6-201ENST00000622954 1905 ntBASIC15□□□□□ -0.01
COL7A1Q02388 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL7A1Q02388 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL7A1Q02388 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC15□□□□□ -0.01
COL7A1Q02388 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC15□□□□□ -0.01
COL7A1Q02388 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL7A1Q02388 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC15□□□□□ -0.01
COL7A1Q02388 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC15□□□□□ -0.01
COL7A1Q02388 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC15□□□□□ -0.01
COL7A1Q02388 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL7A1Q02388 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC15□□□□□ -0.01
COL7A1Q02388 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC15□□□□□ -0.01
COL7A1Q02388 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC15□□□□□ -0.01
COL7A1Q02388 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
COL7A1Q02388 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL7A1Q02388 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL7A1Q02388 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
COL7A1Q02388 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL7A1Q02388 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL7A1Q02388 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC14.99□□□□□ -0.01
COL7A1Q02388 P4HB-223ENST00000576390 439 ntTSL 4 BASIC14.99□□□□□ -0.01
COL7A1Q02388 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC14.99□□□□□ -0.01
COL7A1Q02388 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL7A1Q02388 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC14.99□□□□□ -0.01
COL7A1Q02388 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL7A1Q02388 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
COL7A1Q02388 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL7A1Q02388 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL7A1Q02388 AC113347.1-201ENST00000413321 391 ntBASIC14.99□□□□□ -0.01
COL7A1Q02388 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC14.99□□□□□ -0.01
COL7A1Q02388 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL7A1Q02388 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
COL7A1Q02388 NME3-204ENST00000563498 920 ntTSL 2 BASIC14.99□□□□□ -0.01
COL7A1Q02388 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC14.99□□□□□ -0.01
COL7A1Q02388 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL7A1Q02388 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL7A1Q02388 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL7A1Q02388 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL7A1Q02388 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC14.99□□□□□ -0.01
COL7A1Q02388 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
COL7A1Q02388 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC14.99□□□□□ -0.01
COL7A1Q02388 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL7A1Q02388 MCRIP2P1-201ENST00000394346 511 ntBASIC14.99□□□□□ -0.01
COL7A1Q02388 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL7A1Q02388 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL7A1Q02388 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC14.99□□□□□ -0.01
COL7A1Q02388 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
COL7A1Q02388 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
COL7A1Q02388 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC14.99□□□□□ -0.01
COL7A1Q02388 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
COL7A1Q02388 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL7A1Q02388 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC14.98□□□□□ -0.01
COL7A1Q02388 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL7A1Q02388 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL7A1Q02388 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC14.98□□□□□ -0.01
COL7A1Q02388 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL7A1Q02388 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC14.98□□□□□ -0.01
COL7A1Q02388 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC14.98□□□□□ -0.01
COL7A1Q02388 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL7A1Q02388 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC14.98□□□□□ -0.01
COL7A1Q02388 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
COL7A1Q02388 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC14.98□□□□□ -0.01
COL7A1Q02388 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
COL7A1Q02388 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
COL7A1Q02388 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL7A1Q02388 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL7A1Q02388 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC14.97□□□□□ -0.01
COL7A1Q02388 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
COL7A1Q02388 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL7A1Q02388 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
COL7A1Q02388 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC14.97□□□□□ -0.01
COL7A1Q02388 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
COL7A1Q02388 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
COL7A1Q02388 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL7A1Q02388 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC14.97□□□□□ -0.01
COL7A1Q02388 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL7A1Q02388 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
COL7A1Q02388 CRAT-202ENST00000393384 973 ntTSL 2 BASIC14.97□□□□□ -0.01
COL7A1Q02388 KRT18P57-201ENST00000443599 1254 ntBASIC14.97□□□□□ -0.01
COL7A1Q02388 PRKY-204ENST00000533551 1019 ntBASIC14.97□□□□□ -0.01
COL7A1Q02388 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
COL7A1Q02388 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
COL7A1Q02388 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC14.97□□□□□ -0.01
COL7A1Q02388 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
COL7A1Q02388 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
COL7A1Q02388 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC14.96□□□□□ -0.01
COL7A1Q02388 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC14.96□□□□□ -0.01
COL7A1Q02388 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL7A1Q02388 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL7A1Q02388 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
COL7A1Q02388 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms