Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSX2P35548 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC19.76■□□□□ 0.75
MSX2P35548 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSX2P35548 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
MSX2P35548 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSX2P35548 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSX2P35548 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
MSX2P35548 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSX2P35548 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
MSX2P35548 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
MSX2P35548 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX2P35548 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX2P35548 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX2P35548 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX2P35548 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
MSX2P35548 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC19.75■□□□□ 0.75
MSX2P35548 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MSX2P35548 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MSX2P35548 MIR6724-1-201ENST00000616420 92 ntBASIC19.75■□□□□ 0.75
MSX2P35548 MIR6724-2-201ENST00000616483 92 ntBASIC19.75■□□□□ 0.75
MSX2P35548 MIR6724-4-201ENST00000617390 92 ntBASIC19.75■□□□□ 0.75
MSX2P35548 MIR6724-3-201ENST00000622482 92 ntBASIC19.75■□□□□ 0.75
MSX2P35548 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX2P35548 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.75■□□□□ 0.75
MSX2P35548 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX2P35548 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX2P35548 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
MSX2P35548 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX2P35548 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSX2P35548 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MSX2P35548 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.75■□□□□ 0.75
MSX2P35548 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.75■□□□□ 0.75
MSX2P35548 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSX2P35548 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
MSX2P35548 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.74■□□□□ 0.75
MSX2P35548 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSX2P35548 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
MSX2P35548 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.74■□□□□ 0.75
MSX2P35548 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
MSX2P35548 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.74■□□□□ 0.75
MSX2P35548 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSX2P35548 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC19.74■□□□□ 0.75
MSX2P35548 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.74■□□□□ 0.75
MSX2P35548 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSX2P35548 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSX2P35548 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSX2P35548 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.74■□□□□ 0.75
MSX2P35548 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSX2P35548 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
MSX2P35548 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.73■□□□□ 0.75
MSX2P35548 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSX2P35548 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.73■□□□□ 0.75
MSX2P35548 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSX2P35548 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.73■□□□□ 0.75
MSX2P35548 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSX2P35548 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSX2P35548 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSX2P35548 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSX2P35548 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSX2P35548 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSX2P35548 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
MSX2P35548 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
MSX2P35548 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX2P35548 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.72■□□□□ 0.75
MSX2P35548 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX2P35548 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX2P35548 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX2P35548 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MSX2P35548 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX2P35548 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX2P35548 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
MSX2P35548 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
MSX2P35548 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX2P35548 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX2P35548 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
MSX2P35548 AK3-203ENST00000447596 705 ntTSL 2 BASIC19.72■□□□□ 0.75
MSX2P35548 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX2P35548 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.72■□□□□ 0.75
MSX2P35548 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSX2P35548 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.72■□□□□ 0.75
MSX2P35548 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.71■□□□□ 0.75
MSX2P35548 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
MSX2P35548 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSX2P35548 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
MSX2P35548 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MSX2P35548 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
MSX2P35548 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSX2P35548 UNC93B8-201ENST00000511903 705 ntBASIC19.71■□□□□ 0.75
MSX2P35548 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.71■□□□□ 0.75
MSX2P35548 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.71■□□□□ 0.75
MSX2P35548 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSX2P35548 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSX2P35548 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSX2P35548 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.71■□□□□ 0.75
MSX2P35548 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSX2P35548 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.71■□□□□ 0.75
MSX2P35548 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.71■□□□□ 0.75
MSX2P35548 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.7■□□□□ 0.74
MSX2P35548 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MSX2P35548 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms