Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.92■■□□□ 1.1
BDNFP23560 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
BDNFP23560 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.92■■□□□ 1.1
BDNFP23560 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
BDNFP23560 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.92■■□□□ 1.1
BDNFP23560 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
BDNFP23560 AC010980.2-201ENST00000587099 1412 ntBASIC21.91■■□□□ 1.1
BDNFP23560 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
BDNFP23560 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
BDNFP23560 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
BDNFP23560 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
BDNFP23560 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
BDNFP23560 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
BDNFP23560 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.91■■□□□ 1.1
BDNFP23560 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.91■■□□□ 1.1
BDNFP23560 AC098934.4-201ENST00000564127 592 ntBASIC21.91■■□□□ 1.1
BDNFP23560 FAM21FP-204ENST00000608637 956 ntBASIC21.91■■□□□ 1.1
BDNFP23560 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
BDNFP23560 LINC00565-201ENST00000562710 2331 ntBASIC21.91■■□□□ 1.1
BDNFP23560 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
BDNFP23560 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
BDNFP23560 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.91■■□□□ 1.1
BDNFP23560 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
BDNFP23560 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
BDNFP23560 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
BDNFP23560 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
BDNFP23560 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
BDNFP23560 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.9■■□□□ 1.1
BDNFP23560 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.9■■□□□ 1.1
BDNFP23560 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
BDNFP23560 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
BDNFP23560 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC21.9■■□□□ 1.1
BDNFP23560 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21.9■■□□□ 1.1
BDNFP23560 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.9■■□□□ 1.1
BDNFP23560 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.9■■□□□ 1.1
BDNFP23560 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
BDNFP23560 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
BDNFP23560 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.9■■□□□ 1.1
BDNFP23560 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
BDNFP23560 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
BDNFP23560 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
BDNFP23560 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
BDNFP23560 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
BDNFP23560 BX276092.2-201ENST00000417668 665 ntBASIC21.89■■□□□ 1.09
BDNFP23560 AC007322.3-201ENST00000426526 701 ntBASIC21.89■■□□□ 1.09
BDNFP23560 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
BDNFP23560 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.89■■□□□ 1.09
BDNFP23560 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.89■■□□□ 1.09
BDNFP23560 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.89■■□□□ 1.09
BDNFP23560 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
BDNFP23560 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
BDNFP23560 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
BDNFP23560 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.88■■□□□ 1.09
BDNFP23560 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.88■■□□□ 1.09
BDNFP23560 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
BDNFP23560 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
BDNFP23560 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
BDNFP23560 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
BDNFP23560 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
BDNFP23560 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
BDNFP23560 AC069152.1-201ENST00000438030 544 ntBASIC21.88■■□□□ 1.09
BDNFP23560 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.88■■□□□ 1.09
BDNFP23560 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.88■■□□□ 1.09
BDNFP23560 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.88■■□□□ 1.09
BDNFP23560 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.88■■□□□ 1.09
BDNFP23560 KLF13-207ENST00000560473 489 ntTSL 3 BASIC21.88■■□□□ 1.09
BDNFP23560 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.88■■□□□ 1.09
BDNFP23560 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.88■■□□□ 1.09
BDNFP23560 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
BDNFP23560 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
BDNFP23560 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
BDNFP23560 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
BDNFP23560 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.87■■□□□ 1.09
BDNFP23560 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
BDNFP23560 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
BDNFP23560 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
BDNFP23560 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
BDNFP23560 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
BDNFP23560 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.87■■□□□ 1.09
BDNFP23560 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
BDNFP23560 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.87■■□□□ 1.09
BDNFP23560 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.87■■□□□ 1.09
BDNFP23560 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.87■■□□□ 1.09
BDNFP23560 MIR4758-201ENST00000577688 71 ntBASIC21.87■■□□□ 1.09
BDNFP23560 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.87■■□□□ 1.09
BDNFP23560 AC133041.1-202ENST00000642053 222 ntBASIC21.87■■□□□ 1.09
BDNFP23560 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
BDNFP23560 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
BDNFP23560 AC116050.2-201ENST00000612102 1779 ntBASIC21.87■■□□□ 1.09
BDNFP23560 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
BDNFP23560 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
BDNFP23560 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
BDNFP23560 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.86■■□□□ 1.09
BDNFP23560 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
BDNFP23560 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
BDNFP23560 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC21.86■■□□□ 1.09
BDNFP23560 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC21.86■■□□□ 1.09
BDNFP23560 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
BDNFP23560 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21.85■■□□□ 1.09
BDNFP23560 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms