Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH3P20585 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH3P20585 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.63■□□□□ 0.89
MSH3P20585 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.63■□□□□ 0.89
MSH3P20585 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.63■□□□□ 0.89
MSH3P20585 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.63■□□□□ 0.89
MSH3P20585 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.63■□□□□ 0.89
MSH3P20585 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MSH3P20585 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MSH3P20585 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH3P20585 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH3P20585 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MSH3P20585 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.62■□□□□ 0.89
MSH3P20585 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.62■□□□□ 0.89
MSH3P20585 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.62■□□□□ 0.89
MSH3P20585 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MSH3P20585 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MSH3P20585 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MSH3P20585 MFSD11-216ENST00000590393 1141 ntBASIC20.62■□□□□ 0.89
MSH3P20585 AC010536.3-201ENST00000620306 533 ntBASIC20.62■□□□□ 0.89
MSH3P20585 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.62■□□□□ 0.89
MSH3P20585 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
MSH3P20585 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MSH3P20585 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH3P20585 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
MSH3P20585 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
MSH3P20585 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH3P20585 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH3P20585 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MSH3P20585 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MSH3P20585 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.61■□□□□ 0.89
MSH3P20585 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MSH3P20585 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.61■□□□□ 0.89
MSH3P20585 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.61■□□□□ 0.89
MSH3P20585 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.61■□□□□ 0.89
MSH3P20585 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.61■□□□□ 0.89
MSH3P20585 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.61■□□□□ 0.89
MSH3P20585 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.61■□□□□ 0.89
MSH3P20585 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH3P20585 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH3P20585 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.61■□□□□ 0.89
MSH3P20585 FEM1AP4-201ENST00000443167 1987 ntBASIC20.61■□□□□ 0.89
MSH3P20585 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
MSH3P20585 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MSH3P20585 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH3P20585 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH3P20585 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
MSH3P20585 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH3P20585 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH3P20585 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH3P20585 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH3P20585 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.6■□□□□ 0.89
MSH3P20585 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.6■□□□□ 0.89
MSH3P20585 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.6■□□□□ 0.89
MSH3P20585 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
MSH3P20585 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.6■□□□□ 0.89
MSH3P20585 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.6■□□□□ 0.89
MSH3P20585 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH3P20585 AC005229.4-201ENST00000610085 2198 ntBASIC20.6■□□□□ 0.89
MSH3P20585 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH3P20585 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH3P20585 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
MSH3P20585 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.6■□□□□ 0.89
MSH3P20585 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH3P20585 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.6■□□□□ 0.89
MSH3P20585 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH3P20585 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.59■□□□□ 0.89
MSH3P20585 TERF1P5-201ENST00000477545 1207 ntBASIC20.59■□□□□ 0.89
MSH3P20585 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
MSH3P20585 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
MSH3P20585 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.59■□□□□ 0.89
MSH3P20585 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
MSH3P20585 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
MSH3P20585 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
MSH3P20585 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH3P20585 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH3P20585 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.59■□□□□ 0.89
MSH3P20585 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSH3P20585 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.58■□□□□ 0.89
MSH3P20585 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
MSH3P20585 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSH3P20585 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.89
MSH3P20585 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSH3P20585 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSH3P20585 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
MSH3P20585 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
MSH3P20585 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSH3P20585 AC080038.1-201ENST00000611274 1154 ntBASIC20.58■□□□□ 0.89
MSH3P20585 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
MSH3P20585 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
MSH3P20585 RARRES2P11-201ENST00000635158 484 ntBASIC20.58■□□□□ 0.89
MSH3P20585 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.58■□□□□ 0.89
MSH3P20585 RBM17P2-201ENST00000616397 1405 ntBASIC20.58■□□□□ 0.88
MSH3P20585 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
MSH3P20585 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
MSH3P20585 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
MSH3P20585 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.88
MSH3P20585 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
MSH3P20585 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
MSH3P20585 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms