Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VCANP13611 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
VCANP13611 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VCANP13611 AC100791.3-201ENST00000617619 330 ntBASIC21.71■■□□□ 1.07
VCANP13611 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
VCANP13611 AP000593.1-201ENST00000393668 712 ntBASIC21.7■■□□□ 1.06
VCANP13611 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC21.7■■□□□ 1.06
VCANP13611 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC21.7■■□□□ 1.06
VCANP13611 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VCANP13611 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC21.7■■□□□ 1.06
VCANP13611 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC21.7■■□□□ 1.06
VCANP13611 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC21.7■■□□□ 1.06
VCANP13611 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VCANP13611 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VCANP13611 SAPCD2P4-201ENST00000424595 1171 ntBASIC21.7■■□□□ 1.06
VCANP13611 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC21.7■■□□□ 1.06
VCANP13611 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC21.7■■□□□ 1.06
VCANP13611 AL137013.1-201ENST00000432946 1228 ntBASIC21.69■■□□□ 1.06
VCANP13611 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.69■■□□□ 1.06
VCANP13611 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VCANP13611 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.69■■□□□ 1.06
VCANP13611 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.69■■□□□ 1.06
VCANP13611 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VCANP13611 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VCANP13611 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VCANP13611 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.69■■□□□ 1.06
VCANP13611 SLC25A3P1-201ENST00000443844 931 ntBASIC21.69■■□□□ 1.06
VCANP13611 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.69■■□□□ 1.06
VCANP13611 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC21.69■■□□□ 1.06
VCANP13611 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.69■■□□□ 1.06
VCANP13611 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.69■■□□□ 1.06
VCANP13611 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
VCANP13611 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
VCANP13611 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VCANP13611 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VCANP13611 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.68■■□□□ 1.06
VCANP13611 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC21.68■■□□□ 1.06
VCANP13611 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
VCANP13611 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VCANP13611 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
VCANP13611 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.68■■□□□ 1.06
VCANP13611 AC105020.6-201ENST00000621523 1217 ntBASIC21.68■■□□□ 1.06
VCANP13611 ABCB10P4-201ENST00000566803 2184 ntBASIC21.68■■□□□ 1.06
VCANP13611 LINC01568-207ENST00000641790 1380 ntBASIC21.68■■□□□ 1.06
VCANP13611 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
VCANP13611 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VCANP13611 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.68■■□□□ 1.06
VCANP13611 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC21.68■■□□□ 1.06
VCANP13611 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21.68■■□□□ 1.06
VCANP13611 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
VCANP13611 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
VCANP13611 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
VCANP13611 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VCANP13611 AC079598.2-202ENST00000546624 1451 ntBASIC21.67■■□□□ 1.06
VCANP13611 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VCANP13611 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.67■■□□□ 1.06
VCANP13611 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VCANP13611 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VCANP13611 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.67■■□□□ 1.06
VCANP13611 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.67■■□□□ 1.06
VCANP13611 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VCANP13611 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VCANP13611 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.67■■□□□ 1.06
VCANP13611 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
VCANP13611 AF186192.3-201ENST00000583427 947 ntBASIC21.67■■□□□ 1.06
VCANP13611 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
VCANP13611 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC21.67■■□□□ 1.06
VCANP13611 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.67■■□□□ 1.06
VCANP13611 SRI-203ENST00000419179 1307 ntTSL 2 BASIC21.67■■□□□ 1.06
VCANP13611 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
VCANP13611 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
VCANP13611 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
VCANP13611 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.67■■□□□ 1.06
VCANP13611 RBM17P1-201ENST00000453646 1190 ntBASIC21.67■■□□□ 1.06
VCANP13611 KRT18P16-201ENST00000510337 1294 ntBASIC21.66■■□□□ 1.06
VCANP13611 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VCANP13611 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VCANP13611 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VCANP13611 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VCANP13611 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
VCANP13611 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
VCANP13611 AC053503.5-201ENST00000601508 636 ntBASIC21.66■■□□□ 1.06
VCANP13611 AP000525.1-201ENST00000608286 694 ntBASIC21.66■■□□□ 1.06
VCANP13611 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VCANP13611 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
VCANP13611 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VCANP13611 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.66■■□□□ 1.06
VCANP13611 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.65■■□□□ 1.06
VCANP13611 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.65■■□□□ 1.06
VCANP13611 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VCANP13611 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC21.65■■□□□ 1.06
VCANP13611 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VCANP13611 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VCANP13611 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC21.65■■□□□ 1.06
VCANP13611 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC21.65■■□□□ 1.06
VCANP13611 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VCANP13611 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.65■■□□□ 1.06
VCANP13611 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.65■■□□□ 1.06
VCANP13611 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
VCANP13611 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms