Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CPSF4O95639 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
CPSF4O95639 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CPSF4O95639 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CPSF4O95639 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.71■□□□□ 0.75
CPSF4O95639 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.71■□□□□ 0.75
CPSF4O95639 AL031432.3-201ENST00000607698 485 ntBASIC19.71■□□□□ 0.75
CPSF4O95639 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.71■□□□□ 0.75
CPSF4O95639 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.71■□□□□ 0.75
CPSF4O95639 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CPSF4O95639 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CPSF4O95639 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CPSF4O95639 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.71■□□□□ 0.75
CPSF4O95639 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
CPSF4O95639 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.71■□□□□ 0.75
CPSF4O95639 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CPSF4O95639 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CPSF4O95639 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CPSF4O95639 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CPSF4O95639 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.7■□□□□ 0.74
CPSF4O95639 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CPSF4O95639 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CPSF4O95639 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.7■□□□□ 0.74
CPSF4O95639 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CPSF4O95639 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CPSF4O95639 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CPSF4O95639 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CPSF4O95639 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CPSF4O95639 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CPSF4O95639 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.7■□□□□ 0.74
CPSF4O95639 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.7■□□□□ 0.74
CPSF4O95639 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.7■□□□□ 0.74
CPSF4O95639 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CPSF4O95639 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CPSF4O95639 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CPSF4O95639 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.7■□□□□ 0.74
CPSF4O95639 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CPSF4O95639 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CPSF4O95639 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.69■□□□□ 0.74
CPSF4O95639 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.69■□□□□ 0.74
CPSF4O95639 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CPSF4O95639 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.69■□□□□ 0.74
CPSF4O95639 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CPSF4O95639 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CPSF4O95639 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CPSF4O95639 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CPSF4O95639 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.69■□□□□ 0.74
CPSF4O95639 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.69■□□□□ 0.74
CPSF4O95639 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CPSF4O95639 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
CPSF4O95639 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CPSF4O95639 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CPSF4O95639 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CPSF4O95639 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CPSF4O95639 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.68■□□□□ 0.74
CPSF4O95639 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CPSF4O95639 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CPSF4O95639 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.68■□□□□ 0.74
CPSF4O95639 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.68■□□□□ 0.74
CPSF4O95639 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.68■□□□□ 0.74
CPSF4O95639 AC012414.1-201ENST00000556676 535 ntBASIC19.68■□□□□ 0.74
CPSF4O95639 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CPSF4O95639 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.68■□□□□ 0.74
CPSF4O95639 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CPSF4O95639 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
CPSF4O95639 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CPSF4O95639 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4O95639 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4O95639 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4O95639 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4O95639 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4O95639 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CPSF4O95639 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4O95639 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CPSF4O95639 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4O95639 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CPSF4O95639 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4O95639 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4O95639 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.67■□□□□ 0.74
CPSF4O95639 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CPSF4O95639 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CPSF4O95639 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CPSF4O95639 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4O95639 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CPSF4O95639 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.67■□□□□ 0.74
CPSF4O95639 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CPSF4O95639 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.67■□□□□ 0.74
CPSF4O95639 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.67■□□□□ 0.74
CPSF4O95639 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CPSF4O95639 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CPSF4O95639 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CPSF4O95639 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CPSF4O95639 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CPSF4O95639 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.66■□□□□ 0.74
CPSF4O95639 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CPSF4O95639 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.66■□□□□ 0.74
CPSF4O95639 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CPSF4O95639 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CPSF4O95639 AC073314.1-201ENST00000568729 2216 ntBASIC19.66■□□□□ 0.74
CPSF4O95639 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms