Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SIX3O95343 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
SIX3O95343 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
SIX3O95343 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SIX3O95343 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SIX3O95343 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SIX3O95343 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.25■□□□□ 0.83
SIX3O95343 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SIX3O95343 AC007225.1-201ENST00000566331 1836 ntBASIC20.25■□□□□ 0.83
SIX3O95343 KRT87P-202ENST00000534226 1464 ntBASIC20.25■□□□□ 0.83
SIX3O95343 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SIX3O95343 GABARAPL3-202ENST00000624044 1851 ntBASIC20.25■□□□□ 0.83
SIX3O95343 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.25■□□□□ 0.83
SIX3O95343 AC027702.1-201ENST00000563810 1770 ntBASIC20.25■□□□□ 0.83
SIX3O95343 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.25■□□□□ 0.83
SIX3O95343 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SIX3O95343 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SIX3O95343 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SIX3O95343 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SIX3O95343 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SIX3O95343 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.25■□□□□ 0.83
SIX3O95343 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SIX3O95343 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.24■□□□□ 0.83
SIX3O95343 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
SIX3O95343 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SIX3O95343 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SIX3O95343 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SIX3O95343 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
SIX3O95343 MIR638-201ENST00000385237 100 ntBASIC20.24■□□□□ 0.83
SIX3O95343 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SIX3O95343 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.24■□□□□ 0.83
SIX3O95343 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SIX3O95343 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SIX3O95343 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SIX3O95343 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SIX3O95343 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SIX3O95343 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
SIX3O95343 AL391422.3-201ENST00000603791 2761 ntBASIC20.23■□□□□ 0.83
SIX3O95343 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
SIX3O95343 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
SIX3O95343 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SIX3O95343 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SIX3O95343 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SIX3O95343 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SIX3O95343 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SIX3O95343 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
SIX3O95343 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SIX3O95343 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SIX3O95343 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
SIX3O95343 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SIX3O95343 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SIX3O95343 FP700111.2-201ENST00000619190 1892 ntBASIC20.22■□□□□ 0.83
SIX3O95343 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.22■□□□□ 0.83
SIX3O95343 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.22■□□□□ 0.83
SIX3O95343 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.22■□□□□ 0.83
SIX3O95343 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SIX3O95343 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SIX3O95343 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
SIX3O95343 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SIX3O95343 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SIX3O95343 AC027612.3-201ENST00000413684 1047 ntBASIC20.22■□□□□ 0.83
SIX3O95343 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.22■□□□□ 0.83
SIX3O95343 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.22■□□□□ 0.83
SIX3O95343 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.22■□□□□ 0.83
SIX3O95343 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
SIX3O95343 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
SIX3O95343 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SIX3O95343 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.22■□□□□ 0.83
SIX3O95343 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.22■□□□□ 0.83
SIX3O95343 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SIX3O95343 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.22■□□□□ 0.83
SIX3O95343 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SIX3O95343 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.22■□□□□ 0.83
SIX3O95343 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.21■□□□□ 0.83
SIX3O95343 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.21■□□□□ 0.83
SIX3O95343 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
SIX3O95343 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SIX3O95343 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SIX3O95343 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.21■□□□□ 0.83
SIX3O95343 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
SIX3O95343 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.21■□□□□ 0.83
SIX3O95343 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SIX3O95343 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
SIX3O95343 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SIX3O95343 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.2■□□□□ 0.82
SIX3O95343 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
SIX3O95343 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
SIX3O95343 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
SIX3O95343 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
SIX3O95343 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SIX3O95343 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.2■□□□□ 0.82
SIX3O95343 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.2■□□□□ 0.82
SIX3O95343 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.2■□□□□ 0.82
SIX3O95343 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SIX3O95343 AC008175.2-201ENST00000612840 297 ntBASIC20.2■□□□□ 0.82
SIX3O95343 AC011484.1-201ENST00000377652 1995 ntBASIC20.2■□□□□ 0.82
SIX3O95343 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.2■□□□□ 0.82
SIX3O95343 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
SIX3O95343 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SIX3O95343 PCDHAC2-203ENST00000615316 3011 ntBASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms