Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A5A8TX70 AC079598.2-202ENST00000546624 1451 ntBASIC16.34■□□□□ 0.21
COL6A5A8TX70 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A5A8TX70 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A5A8TX70 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.34■□□□□ 0.21
COL6A5A8TX70 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A5A8TX70 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A5A8TX70 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A5A8TX70 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A5A8TX70 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A5A8TX70 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.34■□□□□ 0.21
COL6A5A8TX70 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.34■□□□□ 0.21
COL6A5A8TX70 AL031963.3-201ENST00000606441 850 ntBASIC16.34■□□□□ 0.21
COL6A5A8TX70 AC073195.1-201ENST00000607241 877 ntBASIC16.34■□□□□ 0.21
COL6A5A8TX70 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
COL6A5A8TX70 AC087633.2-202ENST00000565166 1439 ntBASIC16.34■□□□□ 0.21
COL6A5A8TX70 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A5A8TX70 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC16.34■□□□□ 0.21
COL6A5A8TX70 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL6A5A8TX70 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC16.33■□□□□ 0.21
COL6A5A8TX70 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC16.33■□□□□ 0.21
COL6A5A8TX70 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
COL6A5A8TX70 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A5A8TX70 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A5A8TX70 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
COL6A5A8TX70 KRT18P68-201ENST00000392293 1000 ntBASIC16.33■□□□□ 0.2
COL6A5A8TX70 GGT1-206ENST00000404223 952 ntTSL 2 BASIC16.33■□□□□ 0.2
COL6A5A8TX70 HES2-206ENST00000489730 730 ntTSL 2 BASIC16.33■□□□□ 0.2
COL6A5A8TX70 AP000525.1-201ENST00000608286 694 ntBASIC16.33■□□□□ 0.2
COL6A5A8TX70 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A5A8TX70 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A5A8TX70 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A5A8TX70 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A5A8TX70 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
COL6A5A8TX70 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A5A8TX70 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
COL6A5A8TX70 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
COL6A5A8TX70 AP000550.4-202ENST00000639755 178 ntBASIC16.32■□□□□ 0.2
COL6A5A8TX70 DUSP8P4-201ENST00000399538 1761 ntBASIC16.32■□□□□ 0.2
COL6A5A8TX70 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A5A8TX70 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A5A8TX70 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
COL6A5A8TX70 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A5A8TX70 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A5A8TX70 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC16.32■□□□□ 0.2
COL6A5A8TX70 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC16.32■□□□□ 0.2
COL6A5A8TX70 REXO1L10P-201ENST00000615707 1290 ntBASIC16.32■□□□□ 0.2
COL6A5A8TX70 MYC-208ENST00000641036 567 ntBASIC16.32■□□□□ 0.2
COL6A5A8TX70 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A5A8TX70 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A5A8TX70 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC16.32■□□□□ 0.2
COL6A5A8TX70 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A5A8TX70 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A5A8TX70 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.32■□□□□ 0.2
COL6A5A8TX70 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
COL6A5A8TX70 FAM197Y1-201ENST00000421178 764 ntBASIC16.32■□□□□ 0.2
COL6A5A8TX70 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A5A8TX70 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A5A8TX70 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A5A8TX70 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
COL6A5A8TX70 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A5A8TX70 VMO1-204ENST00000441199 741 ntTSL 2 BASIC16.31■□□□□ 0.2
COL6A5A8TX70 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC16.31■□□□□ 0.2
COL6A5A8TX70 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC16.31■□□□□ 0.2
COL6A5A8TX70 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A5A8TX70 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A5A8TX70 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC16.31■□□□□ 0.2
COL6A5A8TX70 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A5A8TX70 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC16.31■□□□□ 0.2
COL6A5A8TX70 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A5A8TX70 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL6A5A8TX70 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A5A8TX70 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A5A8TX70 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A5A8TX70 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC16.3■□□□□ 0.2
COL6A5A8TX70 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC16.3■□□□□ 0.2
COL6A5A8TX70 AK4P3-201ENST00000418260 669 ntBASIC16.3■□□□□ 0.2
COL6A5A8TX70 AL390955.1-201ENST00000428694 934 ntBASIC16.3■□□□□ 0.2
COL6A5A8TX70 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC16.3■□□□□ 0.2
COL6A5A8TX70 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.3■□□□□ 0.2
COL6A5A8TX70 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC16.3■□□□□ 0.2
COL6A5A8TX70 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC16.3■□□□□ 0.2
COL6A5A8TX70 AC006538.3-201ENST00000612495 578 ntBASIC16.3■□□□□ 0.2
COL6A5A8TX70 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.3■□□□□ 0.2
COL6A5A8TX70 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC16.3■□□□□ 0.2
COL6A5A8TX70 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC16.3■□□□□ 0.2
COL6A5A8TX70 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A5A8TX70 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A5A8TX70 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A5A8TX70 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC16.3■□□□□ 0.2
COL6A5A8TX70 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A5A8TX70 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A5A8TX70 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A5A8TX70 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL6A5A8TX70 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.3■□□□□ 0.2
COL6A5A8TX70 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.3■□□□□ 0.2
COL6A5A8TX70 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A5A8TX70 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL6A5A8TX70 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COL6A5A8TX70 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms