Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 NME3-204ENST00000563498 920 ntTSL 2 BASIC20.78■□□□□ 0.92
VPS13AQ96RL7 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS13AQ96RL7 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.78■□□□□ 0.92
VPS13AQ96RL7 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
VPS13AQ96RL7 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.78■□□□□ 0.92
VPS13AQ96RL7 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS13AQ96RL7 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
VPS13AQ96RL7 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
VPS13AQ96RL7 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.77■□□□□ 0.92
VPS13AQ96RL7 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS13AQ96RL7 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS13AQ96RL7 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
VPS13AQ96RL7 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.77■□□□□ 0.92
VPS13AQ96RL7 PRKY-204ENST00000533551 1019 ntBASIC20.77■□□□□ 0.92
VPS13AQ96RL7 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.77■□□□□ 0.92
VPS13AQ96RL7 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
VPS13AQ96RL7 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS13AQ96RL7 AC137767.1-201ENST00000602918 1920 ntBASIC20.77■□□□□ 0.92
VPS13AQ96RL7 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.77■□□□□ 0.92
VPS13AQ96RL7 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.77■□□□□ 0.92
VPS13AQ96RL7 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS13AQ96RL7 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS13AQ96RL7 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.77■□□□□ 0.92
VPS13AQ96RL7 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
VPS13AQ96RL7 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.77■□□□□ 0.92
VPS13AQ96RL7 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
VPS13AQ96RL7 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
VPS13AQ96RL7 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
VPS13AQ96RL7 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
VPS13AQ96RL7 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
VPS13AQ96RL7 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.77■□□□□ 0.91
VPS13AQ96RL7 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS13AQ96RL7 KRT8P9-201ENST00000558927 1449 ntBASIC20.76■□□□□ 0.91
VPS13AQ96RL7 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS13AQ96RL7 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
VPS13AQ96RL7 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
VPS13AQ96RL7 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS13AQ96RL7 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS13AQ96RL7 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS13AQ96RL7 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS13AQ96RL7 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS13AQ96RL7 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS13AQ96RL7 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
VPS13AQ96RL7 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.75■□□□□ 0.91
VPS13AQ96RL7 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS13AQ96RL7 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS13AQ96RL7 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
VPS13AQ96RL7 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS13AQ96RL7 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
VPS13AQ96RL7 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS13AQ96RL7 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS13AQ96RL7 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS13AQ96RL7 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.75■□□□□ 0.91
VPS13AQ96RL7 NTF6B-201ENST00000591913 560 ntBASIC20.75■□□□□ 0.91
VPS13AQ96RL7 AL121894.2-201ENST00000602977 491 ntBASIC20.75■□□□□ 0.91
VPS13AQ96RL7 AC073508.3-201ENST00000619697 1419 ntBASIC20.75■□□□□ 0.91
VPS13AQ96RL7 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS13AQ96RL7 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC20.75■□□□□ 0.91
VPS13AQ96RL7 RARRES2P10-201ENST00000564312 460 ntBASIC20.75■□□□□ 0.91
VPS13AQ96RL7 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.75■□□□□ 0.91
VPS13AQ96RL7 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS13AQ96RL7 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.74■□□□□ 0.91
VPS13AQ96RL7 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS13AQ96RL7 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS13AQ96RL7 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS13AQ96RL7 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS13AQ96RL7 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS13AQ96RL7 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.74■□□□□ 0.91
VPS13AQ96RL7 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.74■□□□□ 0.91
VPS13AQ96RL7 AC026471.5-201ENST00000615068 467 ntBASIC20.74■□□□□ 0.91
VPS13AQ96RL7 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS13AQ96RL7 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS13AQ96RL7 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS13AQ96RL7 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
VPS13AQ96RL7 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.74■□□□□ 0.91
VPS13AQ96RL7 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS13AQ96RL7 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS13AQ96RL7 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VPS13AQ96RL7 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
VPS13AQ96RL7 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VPS13AQ96RL7 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS13AQ96RL7 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS13AQ96RL7 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.73■□□□□ 0.91
VPS13AQ96RL7 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.73■□□□□ 0.91
VPS13AQ96RL7 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.73■□□□□ 0.91
VPS13AQ96RL7 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.73■□□□□ 0.91
VPS13AQ96RL7 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS13AQ96RL7 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS13AQ96RL7 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.73■□□□□ 0.91
VPS13AQ96RL7 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.73■□□□□ 0.91
VPS13AQ96RL7 UPK3BP1-201ENST00000428678 509 ntBASIC20.73■□□□□ 0.91
VPS13AQ96RL7 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.73■□□□□ 0.91
VPS13AQ96RL7 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS13AQ96RL7 AC120498.10-201ENST00000621827 505 ntBASIC20.73■□□□□ 0.91
VPS13AQ96RL7 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS13AQ96RL7 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.73■□□□□ 0.91
VPS13AQ96RL7 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS13AQ96RL7 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC20.73■□□□□ 0.91
VPS13AQ96RL7 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VPS13AQ96RL7 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms