Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NUDCD3Q8IVD9 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NUDCD3Q8IVD9 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.6■□□□□ 0.89
NUDCD3Q8IVD9 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.6■□□□□ 0.89
NUDCD3Q8IVD9 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUDCD3Q8IVD9 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUDCD3Q8IVD9 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.6■□□□□ 0.89
NUDCD3Q8IVD9 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
NUDCD3Q8IVD9 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NUDCD3Q8IVD9 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUDCD3Q8IVD9 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUDCD3Q8IVD9 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.6■□□□□ 0.89
NUDCD3Q8IVD9 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
NUDCD3Q8IVD9 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.6■□□□□ 0.89
NUDCD3Q8IVD9 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NUDCD3Q8IVD9 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.6■□□□□ 0.89
NUDCD3Q8IVD9 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
NUDCD3Q8IVD9 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
NUDCD3Q8IVD9 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NUDCD3Q8IVD9 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NUDCD3Q8IVD9 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.59■□□□□ 0.89
NUDCD3Q8IVD9 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.59■□□□□ 0.89
NUDCD3Q8IVD9 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NUDCD3Q8IVD9 DUX4L19-201ENST00000557448 1267 ntBASIC20.59■□□□□ 0.89
NUDCD3Q8IVD9 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.59■□□□□ 0.89
NUDCD3Q8IVD9 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.59■□□□□ 0.89
NUDCD3Q8IVD9 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NUDCD3Q8IVD9 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
NUDCD3Q8IVD9 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
NUDCD3Q8IVD9 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NUDCD3Q8IVD9 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
NUDCD3Q8IVD9 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
NUDCD3Q8IVD9 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.59■□□□□ 0.89
NUDCD3Q8IVD9 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.58■□□□□ 0.89
NUDCD3Q8IVD9 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NUDCD3Q8IVD9 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
NUDCD3Q8IVD9 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.58■□□□□ 0.89
NUDCD3Q8IVD9 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
NUDCD3Q8IVD9 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.58■□□□□ 0.89
NUDCD3Q8IVD9 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NUDCD3Q8IVD9 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.58■□□□□ 0.89
NUDCD3Q8IVD9 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.58■□□□□ 0.89
NUDCD3Q8IVD9 SMUG1P1-201ENST00000590640 811 ntBASIC20.58■□□□□ 0.89
NUDCD3Q8IVD9 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.58■□□□□ 0.89
NUDCD3Q8IVD9 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.58■□□□□ 0.89
NUDCD3Q8IVD9 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
NUDCD3Q8IVD9 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NUDCD3Q8IVD9 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
NUDCD3Q8IVD9 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
NUDCD3Q8IVD9 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
NUDCD3Q8IVD9 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.58■□□□□ 0.88
NUDCD3Q8IVD9 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NUDCD3Q8IVD9 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
NUDCD3Q8IVD9 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
NUDCD3Q8IVD9 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
NUDCD3Q8IVD9 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NUDCD3Q8IVD9 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
NUDCD3Q8IVD9 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 AC011298.3-201ENST00000615796 283 ntBASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.57■□□□□ 0.88
NUDCD3Q8IVD9 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
NUDCD3Q8IVD9 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.56■□□□□ 0.88
NUDCD3Q8IVD9 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NUDCD3Q8IVD9 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUDCD3Q8IVD9 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
NUDCD3Q8IVD9 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUDCD3Q8IVD9 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.56■□□□□ 0.88
NUDCD3Q8IVD9 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUDCD3Q8IVD9 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NUDCD3Q8IVD9 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.56■□□□□ 0.88
NUDCD3Q8IVD9 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
NUDCD3Q8IVD9 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
NUDCD3Q8IVD9 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.56■□□□□ 0.88
NUDCD3Q8IVD9 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUDCD3Q8IVD9 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.56■□□□□ 0.88
NUDCD3Q8IVD9 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUDCD3Q8IVD9 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.56■□□□□ 0.88
NUDCD3Q8IVD9 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms