Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC23.87■■□□□ 1.41
SH3RF1Q7Z6J0 AF106564.1-201ENST00000607058 2553 ntBASIC23.87■■□□□ 1.41
SH3RF1Q7Z6J0 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
SH3RF1Q7Z6J0 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
SH3RF1Q7Z6J0 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC23.87■■□□□ 1.41
SH3RF1Q7Z6J0 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC23.87■■□□□ 1.41
SH3RF1Q7Z6J0 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC23.87■■□□□ 1.41
SH3RF1Q7Z6J0 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
SH3RF1Q7Z6J0 PPP1R14BP2-201ENST00000426284 444 ntBASIC23.87■■□□□ 1.41
SH3RF1Q7Z6J0 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC23.87■■□□□ 1.41
SH3RF1Q7Z6J0 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC23.87■■□□□ 1.41
SH3RF1Q7Z6J0 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC23.87■■□□□ 1.41
SH3RF1Q7Z6J0 MFF-207ENST00000409565 1548 ntTSL 2 BASIC23.87■■□□□ 1.41
SH3RF1Q7Z6J0 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SH3RF1Q7Z6J0 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SH3RF1Q7Z6J0 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SH3RF1Q7Z6J0 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SH3RF1Q7Z6J0 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC23.87■■□□□ 1.41
SH3RF1Q7Z6J0 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SH3RF1Q7Z6J0 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC23.86■■□□□ 1.41
SH3RF1Q7Z6J0 AP006587.3-201ENST00000525742 1516 ntBASIC23.86■■□□□ 1.41
SH3RF1Q7Z6J0 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
SH3RF1Q7Z6J0 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SH3RF1Q7Z6J0 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC23.86■■□□□ 1.41
SH3RF1Q7Z6J0 DUSP5P2-201ENST00000426873 1033 ntBASIC23.86■■□□□ 1.41
SH3RF1Q7Z6J0 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC23.86■■□□□ 1.41
SH3RF1Q7Z6J0 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC23.86■■□□□ 1.41
SH3RF1Q7Z6J0 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SH3RF1Q7Z6J0 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC23.85■■□□□ 1.41
SH3RF1Q7Z6J0 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.85■■□□□ 1.41
SH3RF1Q7Z6J0 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SH3RF1Q7Z6J0 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SH3RF1Q7Z6J0 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SH3RF1Q7Z6J0 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC23.85■■□□□ 1.41
SH3RF1Q7Z6J0 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SH3RF1Q7Z6J0 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SH3RF1Q7Z6J0 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC23.85■■□□□ 1.41
SH3RF1Q7Z6J0 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SH3RF1Q7Z6J0 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SH3RF1Q7Z6J0 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SH3RF1Q7Z6J0 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SH3RF1Q7Z6J0 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SH3RF1Q7Z6J0 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SH3RF1Q7Z6J0 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SH3RF1Q7Z6J0 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
SH3RF1Q7Z6J0 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC23.84■■□□□ 1.41
SH3RF1Q7Z6J0 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC23.84■■□□□ 1.41
SH3RF1Q7Z6J0 PHB2-213ENST00000546111 858 ntTSL 2 BASIC23.84■■□□□ 1.41
SH3RF1Q7Z6J0 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC23.84■■□□□ 1.41
SH3RF1Q7Z6J0 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC23.84■■□□□ 1.41
SH3RF1Q7Z6J0 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SH3RF1Q7Z6J0 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SH3RF1Q7Z6J0 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
SH3RF1Q7Z6J0 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC23.84■■□□□ 1.41
SH3RF1Q7Z6J0 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SH3RF1Q7Z6J0 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SH3RF1Q7Z6J0 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SH3RF1Q7Z6J0 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SH3RF1Q7Z6J0 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC23.83■■□□□ 1.41
SH3RF1Q7Z6J0 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC23.83■■□□□ 1.41
SH3RF1Q7Z6J0 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC23.83■■□□□ 1.41
SH3RF1Q7Z6J0 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SH3RF1Q7Z6J0 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SH3RF1Q7Z6J0 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC23.83■■□□□ 1.41
SH3RF1Q7Z6J0 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC23.83■■□□□ 1.41
SH3RF1Q7Z6J0 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC23.83■■□□□ 1.41
SH3RF1Q7Z6J0 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC23.83■■□□□ 1.41
SH3RF1Q7Z6J0 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC23.83■■□□□ 1.41
SH3RF1Q7Z6J0 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
SH3RF1Q7Z6J0 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SH3RF1Q7Z6J0 AL024507.2-201ENST00000606070 2574 ntBASIC23.82■■□□□ 1.4
SH3RF1Q7Z6J0 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SH3RF1Q7Z6J0 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC23.82■■□□□ 1.4
SH3RF1Q7Z6J0 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC23.82■■□□□ 1.4
SH3RF1Q7Z6J0 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC23.82■■□□□ 1.4
SH3RF1Q7Z6J0 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC23.82■■□□□ 1.4
SH3RF1Q7Z6J0 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SH3RF1Q7Z6J0 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC23.82■■□□□ 1.4
SH3RF1Q7Z6J0 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SH3RF1Q7Z6J0 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SH3RF1Q7Z6J0 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC23.82■■□□□ 1.4
SH3RF1Q7Z6J0 AC055733.4-201ENST00000638462 1354 ntBASIC23.81■■□□□ 1.4
SH3RF1Q7Z6J0 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SH3RF1Q7Z6J0 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SH3RF1Q7Z6J0 MKRN4P-201ENST00000444706 1521 ntBASIC23.81■■□□□ 1.4
SH3RF1Q7Z6J0 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SH3RF1Q7Z6J0 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC23.81■■□□□ 1.4
SH3RF1Q7Z6J0 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC23.81■■□□□ 1.4
SH3RF1Q7Z6J0 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
SH3RF1Q7Z6J0 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SH3RF1Q7Z6J0 BMP1-204ENST00000397814 836 ntTSL 4 BASIC23.81■■□□□ 1.4
SH3RF1Q7Z6J0 RARRES2P4-201ENST00000514074 484 ntBASIC23.81■■□□□ 1.4
SH3RF1Q7Z6J0 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SH3RF1Q7Z6J0 AC068338.2-201ENST00000563278 1430 ntBASIC23.81■■□□□ 1.4
SH3RF1Q7Z6J0 DYM-203ENST00000442713 2147 ntTSL 2 BASIC23.81■■□□□ 1.4
SH3RF1Q7Z6J0 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC23.81■■□□□ 1.4
SH3RF1Q7Z6J0 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC23.8■■□□□ 1.4
SH3RF1Q7Z6J0 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SH3RF1Q7Z6J0 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC23.8■■□□□ 1.4
SH3RF1Q7Z6J0 AL596275.1-201ENST00000423464 877 ntBASIC23.8■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms