Protein–RNA interactions for Protein: Q5SRH9

TTC39A, Tetratricopeptide repeat protein 39A, humanhuman

Predictions only

Length 613 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC39AQ5SRH9 LINC00565-201ENST00000562710 2331 ntBASIC25.37■■□□□ 1.65
TTC39AQ5SRH9 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
TTC39AQ5SRH9 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC25.37■■□□□ 1.65
TTC39AQ5SRH9 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC25.37■■□□□ 1.65
TTC39AQ5SRH9 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
TTC39AQ5SRH9 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
TTC39AQ5SRH9 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
TTC39AQ5SRH9 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC25.37■■□□□ 1.65
TTC39AQ5SRH9 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC25.37■■□□□ 1.65
TTC39AQ5SRH9 AL162412.1-201ENST00000567129 965 ntBASIC25.37■■□□□ 1.65
TTC39AQ5SRH9 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC25.37■■□□□ 1.65
TTC39AQ5SRH9 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC25.37■■□□□ 1.65
TTC39AQ5SRH9 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
TTC39AQ5SRH9 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
TTC39AQ5SRH9 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
TTC39AQ5SRH9 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
TTC39AQ5SRH9 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC25.36■■□□□ 1.65
TTC39AQ5SRH9 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC25.36■■□□□ 1.65
TTC39AQ5SRH9 PALM-207ENST00000590161 2137 ntTSL 4 BASIC25.36■■□□□ 1.65
TTC39AQ5SRH9 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
TTC39AQ5SRH9 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
TTC39AQ5SRH9 GUSBP6-202ENST00000438529 1198 ntBASIC25.36■■□□□ 1.65
TTC39AQ5SRH9 TSPY6P-201ENST00000448518 926 ntBASIC25.36■■□□□ 1.65
TTC39AQ5SRH9 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
TTC39AQ5SRH9 OR10C1-204ENST00000622521 1039 ntBASIC25.36■■□□□ 1.65
TTC39AQ5SRH9 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC25.36■■□□□ 1.65
TTC39AQ5SRH9 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC25.36■■□□□ 1.65
TTC39AQ5SRH9 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
TTC39AQ5SRH9 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
TTC39AQ5SRH9 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC25.35■■□□□ 1.65
TTC39AQ5SRH9 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
TTC39AQ5SRH9 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
TTC39AQ5SRH9 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
TTC39AQ5SRH9 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC25.35■■□□□ 1.65
TTC39AQ5SRH9 AL355802.2-201ENST00000402069 882 ntBASIC25.35■■□□□ 1.65
TTC39AQ5SRH9 AC093787.1-201ENST00000450396 207 ntBASIC25.35■■□□□ 1.65
TTC39AQ5SRH9 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC25.35■■□□□ 1.65
TTC39AQ5SRH9 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC25.35■■□□□ 1.65
TTC39AQ5SRH9 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC25.35■■□□□ 1.65
TTC39AQ5SRH9 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC25.35■■□□□ 1.65
TTC39AQ5SRH9 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
TTC39AQ5SRH9 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
TTC39AQ5SRH9 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
TTC39AQ5SRH9 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC25.35■■□□□ 1.65
TTC39AQ5SRH9 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC25.35■■□□□ 1.65
TTC39AQ5SRH9 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
TTC39AQ5SRH9 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
TTC39AQ5SRH9 SLC29A4P1-201ENST00000398760 971 ntBASIC25.34■■□□□ 1.65
TTC39AQ5SRH9 PTPA-214ENST00000423100 988 ntTSL 2 BASIC25.34■■□□□ 1.65
TTC39AQ5SRH9 PBX1-209ENST00000485769 834 ntTSL 2 BASIC25.34■■□□□ 1.65
TTC39AQ5SRH9 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
TTC39AQ5SRH9 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC25.34■■□□□ 1.65
TTC39AQ5SRH9 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
TTC39AQ5SRH9 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC25.34■■□□□ 1.65
TTC39AQ5SRH9 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
TTC39AQ5SRH9 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC25.33■■□□□ 1.65
TTC39AQ5SRH9 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
TTC39AQ5SRH9 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC25.33■■□□□ 1.65
TTC39AQ5SRH9 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
TTC39AQ5SRH9 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC25.33■■□□□ 1.65
TTC39AQ5SRH9 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
TTC39AQ5SRH9 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
TTC39AQ5SRH9 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
TTC39AQ5SRH9 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC25.33■■□□□ 1.65
TTC39AQ5SRH9 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
TTC39AQ5SRH9 CDV3P1-201ENST00000471403 739 ntBASIC25.33■■□□□ 1.65
TTC39AQ5SRH9 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC25.33■■□□□ 1.65
TTC39AQ5SRH9 RARRES2P4-201ENST00000514074 484 ntBASIC25.33■■□□□ 1.65
TTC39AQ5SRH9 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
TTC39AQ5SRH9 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
TTC39AQ5SRH9 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC25.33■■□□□ 1.65
TTC39AQ5SRH9 GAMT-205ENST00000640762 751 ntTSL 5 BASIC25.33■■□□□ 1.65
TTC39AQ5SRH9 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC25.33■■□□□ 1.65
TTC39AQ5SRH9 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
TTC39AQ5SRH9 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.64
TTC39AQ5SRH9 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
TTC39AQ5SRH9 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC25.32■■□□□ 1.64
TTC39AQ5SRH9 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
TTC39AQ5SRH9 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
TTC39AQ5SRH9 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
TTC39AQ5SRH9 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC25.32■■□□□ 1.64
TTC39AQ5SRH9 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
TTC39AQ5SRH9 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC25.32■■□□□ 1.64
TTC39AQ5SRH9 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC25.32■■□□□ 1.64
TTC39AQ5SRH9 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
TTC39AQ5SRH9 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
TTC39AQ5SRH9 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC25.32■■□□□ 1.64
TTC39AQ5SRH9 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC25.31■■□□□ 1.64
TTC39AQ5SRH9 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
TTC39AQ5SRH9 PHB2-213ENST00000546111 858 ntTSL 2 BASIC25.31■■□□□ 1.64
TTC39AQ5SRH9 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC25.31■■□□□ 1.64
TTC39AQ5SRH9 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC25.31■■□□□ 1.64
TTC39AQ5SRH9 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC25.31■■□□□ 1.64
TTC39AQ5SRH9 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
TTC39AQ5SRH9 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
TTC39AQ5SRH9 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
TTC39AQ5SRH9 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
TTC39AQ5SRH9 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
TTC39AQ5SRH9 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
TTC39AQ5SRH9 CASP6-205ENST00000505486 538 ntTSL 4 BASIC25.3■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms