Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.29■□□□□ 0.84
YBX1P67809 KRT19P1-201ENST00000405746 1186 ntBASIC20.29■□□□□ 0.84
YBX1P67809 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
YBX1P67809 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
YBX1P67809 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
YBX1P67809 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.29■□□□□ 0.84
YBX1P67809 LINC01006-201ENST00000333319 2292 ntBASIC20.29■□□□□ 0.84
YBX1P67809 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
YBX1P67809 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
YBX1P67809 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.29■□□□□ 0.84
YBX1P67809 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
YBX1P67809 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
YBX1P67809 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
YBX1P67809 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
YBX1P67809 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
YBX1P67809 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
YBX1P67809 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
YBX1P67809 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.28■□□□□ 0.84
YBX1P67809 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.28■□□□□ 0.84
YBX1P67809 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.28■□□□□ 0.84
YBX1P67809 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.28■□□□□ 0.84
YBX1P67809 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.28■□□□□ 0.84
YBX1P67809 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.28■□□□□ 0.84
YBX1P67809 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
YBX1P67809 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.28■□□□□ 0.84
YBX1P67809 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.28■□□□□ 0.84
YBX1P67809 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.28■□□□□ 0.84
YBX1P67809 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
YBX1P67809 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.27■□□□□ 0.84
YBX1P67809 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.27■□□□□ 0.84
YBX1P67809 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
YBX1P67809 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
YBX1P67809 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
YBX1P67809 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
YBX1P67809 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.27■□□□□ 0.84
YBX1P67809 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.27■□□□□ 0.84
YBX1P67809 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.27■□□□□ 0.84
YBX1P67809 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.27■□□□□ 0.84
YBX1P67809 AC092666.2-201ENST00000613287 246 ntBASIC20.27■□□□□ 0.84
YBX1P67809 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
YBX1P67809 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
YBX1P67809 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
YBX1P67809 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
YBX1P67809 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.83
YBX1P67809 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.26■□□□□ 0.83
YBX1P67809 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
YBX1P67809 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
YBX1P67809 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
YBX1P67809 AC137761.2-201ENST00000561729 223 ntBASIC20.26■□□□□ 0.83
YBX1P67809 AC145350.3-201ENST00000569033 163 ntBASIC20.26■□□□□ 0.83
YBX1P67809 UBE2DNL-204ENST00000602536 740 ntBASIC20.26■□□□□ 0.83
YBX1P67809 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
YBX1P67809 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
YBX1P67809 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.26■□□□□ 0.83
YBX1P67809 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
YBX1P67809 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
YBX1P67809 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
YBX1P67809 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
YBX1P67809 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
YBX1P67809 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.25■□□□□ 0.83
YBX1P67809 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.25■□□□□ 0.83
YBX1P67809 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
YBX1P67809 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
YBX1P67809 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
YBX1P67809 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.25■□□□□ 0.83
YBX1P67809 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.25■□□□□ 0.83
YBX1P67809 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
YBX1P67809 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
YBX1P67809 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
YBX1P67809 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.25■□□□□ 0.83
YBX1P67809 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
YBX1P67809 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
YBX1P67809 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.24■□□□□ 0.83
YBX1P67809 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
YBX1P67809 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.24■□□□□ 0.83
YBX1P67809 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
YBX1P67809 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.24■□□□□ 0.83
YBX1P67809 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.24■□□□□ 0.83
YBX1P67809 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.24■□□□□ 0.83
YBX1P67809 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
YBX1P67809 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
YBX1P67809 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
YBX1P67809 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
YBX1P67809 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
YBX1P67809 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
YBX1P67809 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
YBX1P67809 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
YBX1P67809 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
YBX1P67809 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
YBX1P67809 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
YBX1P67809 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.23■□□□□ 0.83
YBX1P67809 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.23■□□□□ 0.83
YBX1P67809 AC006015.1-201ENST00000429970 570 ntBASIC20.23■□□□□ 0.83
YBX1P67809 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
YBX1P67809 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.23■□□□□ 0.83
YBX1P67809 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
YBX1P67809 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
YBX1P67809 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
YBX1P67809 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.23■□□□□ 0.83
YBX1P67809 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms