Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIM2P55344 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIM2P55344 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.75■□□□□ 0.75
LIM2P55344 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIM2P55344 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIM2P55344 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.74■□□□□ 0.75
LIM2P55344 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
LIM2P55344 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
LIM2P55344 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
LIM2P55344 AC006015.1-201ENST00000429970 570 ntBASIC19.74■□□□□ 0.75
LIM2P55344 KRT18P11-201ENST00000435214 1283 ntBASIC19.74■□□□□ 0.75
LIM2P55344 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.74■□□□□ 0.75
LIM2P55344 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIM2P55344 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.74■□□□□ 0.75
LIM2P55344 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.74■□□□□ 0.75
LIM2P55344 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.74■□□□□ 0.75
LIM2P55344 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.74■□□□□ 0.75
LIM2P55344 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.74■□□□□ 0.75
LIM2P55344 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
LIM2P55344 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
LIM2P55344 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.74■□□□□ 0.75
LIM2P55344 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIM2P55344 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.73■□□□□ 0.75
LIM2P55344 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
LIM2P55344 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
LIM2P55344 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIM2P55344 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.73■□□□□ 0.75
LIM2P55344 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.73■□□□□ 0.75
LIM2P55344 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.73■□□□□ 0.75
LIM2P55344 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.73■□□□□ 0.75
LIM2P55344 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.73■□□□□ 0.75
LIM2P55344 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.73■□□□□ 0.75
LIM2P55344 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIM2P55344 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIM2P55344 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIM2P55344 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.73■□□□□ 0.75
LIM2P55344 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.73■□□□□ 0.75
LIM2P55344 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.73■□□□□ 0.75
LIM2P55344 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
LIM2P55344 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIM2P55344 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIM2P55344 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
LIM2P55344 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIM2P55344 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIM2P55344 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.72■□□□□ 0.75
LIM2P55344 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
LIM2P55344 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIM2P55344 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.72■□□□□ 0.75
LIM2P55344 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.72■□□□□ 0.75
LIM2P55344 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.72■□□□□ 0.75
LIM2P55344 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIM2P55344 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIM2P55344 IKBKGP1-201ENST00000612193 1073 ntBASIC19.72■□□□□ 0.75
LIM2P55344 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.72■□□□□ 0.75
LIM2P55344 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIM2P55344 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIM2P55344 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIM2P55344 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIM2P55344 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
LIM2P55344 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIM2P55344 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIM2P55344 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
LIM2P55344 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
LIM2P55344 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIM2P55344 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
LIM2P55344 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
LIM2P55344 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.71■□□□□ 0.75
LIM2P55344 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.71■□□□□ 0.75
LIM2P55344 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIM2P55344 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIM2P55344 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
LIM2P55344 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIM2P55344 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIM2P55344 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIM2P55344 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIM2P55344 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.71■□□□□ 0.75
LIM2P55344 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIM2P55344 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIM2P55344 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.71■□□□□ 0.75
LIM2P55344 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.74
LIM2P55344 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.7■□□□□ 0.74
LIM2P55344 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIM2P55344 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIM2P55344 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
LIM2P55344 AL049796.1-201ENST00000565336 1766 ntBASIC19.7■□□□□ 0.74
LIM2P55344 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIM2P55344 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
LIM2P55344 AC092437.1-201ENST00000624794 1048 ntBASIC19.7■□□□□ 0.74
LIM2P55344 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIM2P55344 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.7■□□□□ 0.74
LIM2P55344 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIM2P55344 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.7■□□□□ 0.74
LIM2P55344 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
LIM2P55344 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.7■□□□□ 0.74
LIM2P55344 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.69■□□□□ 0.74
LIM2P55344 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIM2P55344 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
LIM2P55344 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIM2P55344 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIM2P55344 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms