Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.25■□□□□ 0.51
SOX2P48431 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SOX2P48431 TRIR-205ENST00000592273 783 ntTSL 3 BASIC18.25■□□□□ 0.51
SOX2P48431 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SOX2P48431 AC121338.2-201ENST00000622535 1744 ntBASIC18.25■□□□□ 0.51
SOX2P48431 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
SOX2P48431 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SOX2P48431 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.25■□□□□ 0.51
SOX2P48431 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.25■□□□□ 0.51
SOX2P48431 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC18.24■□□□□ 0.51
SOX2P48431 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SOX2P48431 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
SOX2P48431 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SOX2P48431 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.24■□□□□ 0.51
SOX2P48431 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SOX2P48431 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SOX2P48431 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SOX2P48431 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
SOX2P48431 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SOX2P48431 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.24■□□□□ 0.51
SOX2P48431 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SOX2P48431 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SOX2P48431 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC18.24■□□□□ 0.51
SOX2P48431 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC18.24■□□□□ 0.51
SOX2P48431 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.24■□□□□ 0.51
SOX2P48431 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.24■□□□□ 0.51
SOX2P48431 SMUG1P1-201ENST00000590640 811 ntBASIC18.24■□□□□ 0.51
SOX2P48431 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC18.24■□□□□ 0.51
SOX2P48431 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC18.24■□□□□ 0.51
SOX2P48431 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SOX2P48431 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
SOX2P48431 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SOX2P48431 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.24■□□□□ 0.51
SOX2P48431 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SOX2P48431 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SOX2P48431 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX2P48431 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX2P48431 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX2P48431 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX2P48431 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.23■□□□□ 0.51
SOX2P48431 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX2P48431 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SOX2P48431 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.23■□□□□ 0.51
SOX2P48431 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
SOX2P48431 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.23■□□□□ 0.51
SOX2P48431 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SOX2P48431 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SOX2P48431 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC18.23■□□□□ 0.51
SOX2P48431 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.23■□□□□ 0.51
SOX2P48431 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SOX2P48431 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.23■□□□□ 0.51
SOX2P48431 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.23■□□□□ 0.51
SOX2P48431 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC18.23■□□□□ 0.51
SOX2P48431 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.23■□□□□ 0.51
SOX2P48431 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
SOX2P48431 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX2P48431 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX2P48431 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SOX2P48431 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.23■□□□□ 0.51
SOX2P48431 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC18.23■□□□□ 0.51
SOX2P48431 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SOX2P48431 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SOX2P48431 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SOX2P48431 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SOX2P48431 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
SOX2P48431 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC18.22■□□□□ 0.51
SOX2P48431 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
SOX2P48431 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC18.22■□□□□ 0.51
SOX2P48431 SNX3-202ENST00000349379 890 ntTSL 2 BASIC18.22■□□□□ 0.51
SOX2P48431 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SOX2P48431 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC18.22■□□□□ 0.51
SOX2P48431 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC18.22■□□□□ 0.51
SOX2P48431 AL356441.2-201ENST00000443009 864 ntBASIC18.22■□□□□ 0.51
SOX2P48431 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC18.22■□□□□ 0.51
SOX2P48431 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SOX2P48431 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC18.22■□□□□ 0.51
SOX2P48431 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC18.22■□□□□ 0.51
SOX2P48431 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC18.22■□□□□ 0.51
SOX2P48431 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SOX2P48431 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.22■□□□□ 0.51
SOX2P48431 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SOX2P48431 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
SOX2P48431 AC027702.1-201ENST00000563810 1770 ntBASIC18.22■□□□□ 0.51
SOX2P48431 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SOX2P48431 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SOX2P48431 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
SOX2P48431 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SOX2P48431 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SOX2P48431 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.22■□□□□ 0.51
SOX2P48431 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.21■□□□□ 0.51
SOX2P48431 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SOX2P48431 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SOX2P48431 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SOX2P48431 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.21■□□□□ 0.51
SOX2P48431 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SOX2P48431 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SOX2P48431 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.21■□□□□ 0.51
SOX2P48431 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SOX2P48431 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SOX2P48431 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms