Protein–RNA interactions for Protein: P35523

CLCN1, Chloride channel protein 1, humanhuman

Predictions only

Length 988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN1P35523 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.36
CLCN1P35523 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC23.58■■□□□ 1.36
CLCN1P35523 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
CLCN1P35523 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
CLCN1P35523 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.36
CLCN1P35523 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC23.58■■□□□ 1.36
CLCN1P35523 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.36
CLCN1P35523 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN1P35523 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN1P35523 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC23.57■■□□□ 1.36
CLCN1P35523 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN1P35523 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN1P35523 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC23.57■■□□□ 1.36
CLCN1P35523 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN1P35523 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN1P35523 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN1P35523 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN1P35523 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN1P35523 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN1P35523 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CLCN1P35523 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC23.57■■□□□ 1.36
CLCN1P35523 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC23.57■■□□□ 1.36
CLCN1P35523 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC23.56■■□□□ 1.36
CLCN1P35523 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CLCN1P35523 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
CLCN1P35523 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CLCN1P35523 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CLCN1P35523 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC23.56■■□□□ 1.36
CLCN1P35523 RPP21-222ENST00000433076 577 ntTSL 2 BASIC23.56■■□□□ 1.36
CLCN1P35523 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CLCN1P35523 MIR4466-201ENST00000606121 54 ntBASIC23.56■■□□□ 1.36
CLCN1P35523 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC23.56■■□□□ 1.36
CLCN1P35523 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CLCN1P35523 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC23.56■■□□□ 1.36
CLCN1P35523 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CLCN1P35523 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
CLCN1P35523 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CLCN1P35523 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CLCN1P35523 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CLCN1P35523 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CLCN1P35523 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC23.55■■□□□ 1.36
CLCN1P35523 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC23.55■■□□□ 1.36
CLCN1P35523 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CLCN1P35523 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CLCN1P35523 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC23.55■■□□□ 1.36
CLCN1P35523 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC23.55■■□□□ 1.36
CLCN1P35523 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC23.55■■□□□ 1.36
CLCN1P35523 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC23.55■■□□□ 1.36
CLCN1P35523 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC23.55■■□□□ 1.36
CLCN1P35523 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC23.55■■□□□ 1.36
CLCN1P35523 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
CLCN1P35523 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC23.55■■□□□ 1.36
CLCN1P35523 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CLCN1P35523 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CLCN1P35523 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
CLCN1P35523 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CLCN1P35523 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC23.54■■□□□ 1.36
CLCN1P35523 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CLCN1P35523 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CLCN1P35523 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC23.54■■□□□ 1.36
CLCN1P35523 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC23.54■■□□□ 1.36
CLCN1P35523 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC23.53■■□□□ 1.36
CLCN1P35523 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
CLCN1P35523 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
CLCN1P35523 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC23.53■■□□□ 1.36
CLCN1P35523 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CLCN1P35523 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC23.53■■□□□ 1.36
CLCN1P35523 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CLCN1P35523 TRIR-202ENST00000588213 841 ntTSL 3 BASIC23.53■■□□□ 1.36
CLCN1P35523 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
CLCN1P35523 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
CLCN1P35523 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CLCN1P35523 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
CLCN1P35523 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CLCN1P35523 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CLCN1P35523 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CLCN1P35523 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CLCN1P35523 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CLCN1P35523 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CLCN1P35523 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
CLCN1P35523 LINC01960-201ENST00000563759 1884 ntBASIC23.52■■□□□ 1.36
CLCN1P35523 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CLCN1P35523 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC23.52■■□□□ 1.36
CLCN1P35523 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC23.52■■□□□ 1.36
CLCN1P35523 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
CLCN1P35523 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC23.52■■□□□ 1.36
CLCN1P35523 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CLCN1P35523 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC23.52■■□□□ 1.36
CLCN1P35523 AC112907.3-201ENST00000577781 2400 ntBASIC23.52■■□□□ 1.36
CLCN1P35523 AL049796.1-201ENST00000565336 1766 ntBASIC23.52■■□□□ 1.36
CLCN1P35523 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CLCN1P35523 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC23.52■■□□□ 1.36
CLCN1P35523 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CLCN1P35523 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC23.52■■□□□ 1.35
CLCN1P35523 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CLCN1P35523 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CLCN1P35523 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CLCN1P35523 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CLCN1P35523 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC23.51■■□□□ 1.35
CLCN1P35523 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms