Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
CIITAP33076 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC23.52■■□□□ 1.36
CIITAP33076 SAPCD2P1-201ENST00000395413 1184 ntBASIC23.52■■□□□ 1.36
CIITAP33076 BET1L-204ENST00000410108 637 ntTSL 3 BASIC23.52■■□□□ 1.36
CIITAP33076 PTPA-214ENST00000423100 988 ntTSL 2 BASIC23.52■■□□□ 1.36
CIITAP33076 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC23.52■■□□□ 1.36
CIITAP33076 OAS3-207ENST00000551007 998 ntTSL 2 BASIC23.52■■□□□ 1.36
CIITAP33076 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC23.52■■□□□ 1.36
CIITAP33076 AC016405.3-201ENST00000607710 860 ntBASIC23.52■■□□□ 1.36
CIITAP33076 AL024507.2-201ENST00000606070 2574 ntBASIC23.52■■□□□ 1.36
CIITAP33076 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
CIITAP33076 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CIITAP33076 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC23.52■■□□□ 1.36
CIITAP33076 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
CIITAP33076 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC23.51■■□□□ 1.35
CIITAP33076 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CIITAP33076 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
CIITAP33076 FEM1AP4-201ENST00000443167 1987 ntBASIC23.51■■□□□ 1.35
CIITAP33076 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CIITAP33076 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CIITAP33076 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CIITAP33076 METTL15-202ENST00000403099 795 ntTSL 5 BASIC23.51■■□□□ 1.35
CIITAP33076 FAM21FP-204ENST00000608637 956 ntBASIC23.51■■□□□ 1.35
CIITAP33076 AL121832.2-201ENST00000610979 668 ntBASIC23.51■■□□□ 1.35
CIITAP33076 OR10C1-204ENST00000622521 1039 ntBASIC23.51■■□□□ 1.35
CIITAP33076 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC23.51■■□□□ 1.35
CIITAP33076 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
CIITAP33076 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CIITAP33076 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC23.51■■□□□ 1.35
CIITAP33076 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC23.5■■□□□ 1.35
CIITAP33076 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC23.5■■□□□ 1.35
CIITAP33076 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CIITAP33076 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CIITAP33076 ID1-201ENST00000376105 1233 ntBASIC23.5■■□□□ 1.35
CIITAP33076 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CIITAP33076 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
CIITAP33076 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
CIITAP33076 PBX1-209ENST00000485769 834 ntTSL 2 BASIC23.5■■□□□ 1.35
CIITAP33076 AC083906.2-201ENST00000511578 360 ntBASIC23.5■■□□□ 1.35
CIITAP33076 RARRES2P4-201ENST00000514074 484 ntBASIC23.5■■□□□ 1.35
CIITAP33076 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC23.5■■□□□ 1.35
CIITAP33076 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CIITAP33076 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CIITAP33076 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CIITAP33076 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CIITAP33076 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.49■■□□□ 1.35
CIITAP33076 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CIITAP33076 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
CIITAP33076 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
CIITAP33076 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CIITAP33076 AL512625.2-201ENST00000417533 625 ntBASIC23.49■■□□□ 1.35
CIITAP33076 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC23.49■■□□□ 1.35
CIITAP33076 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
CIITAP33076 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CIITAP33076 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC23.49■■□□□ 1.35
CIITAP33076 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
CIITAP33076 AL049796.1-201ENST00000565336 1766 ntBASIC23.49■■□□□ 1.35
CIITAP33076 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC23.49■■□□□ 1.35
CIITAP33076 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CIITAP33076 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
CIITAP33076 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
CIITAP33076 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CIITAP33076 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
CIITAP33076 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC23.48■■□□□ 1.35
CIITAP33076 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC23.48■■□□□ 1.35
CIITAP33076 AC026310.3-201ENST00000625186 2373 ntBASIC23.48■■□□□ 1.35
CIITAP33076 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
CIITAP33076 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CIITAP33076 GPX1P1-201ENST00000388829 606 ntBASIC23.48■■□□□ 1.35
CIITAP33076 GUSBP6-202ENST00000438529 1198 ntBASIC23.48■■□□□ 1.35
CIITAP33076 CDV3P1-201ENST00000471403 739 ntBASIC23.48■■□□□ 1.35
CIITAP33076 AC069236.1-201ENST00000604339 616 ntBASIC23.48■■□□□ 1.35
CIITAP33076 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
CIITAP33076 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CIITAP33076 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
CIITAP33076 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
CIITAP33076 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC23.48■■□□□ 1.35
CIITAP33076 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC23.47■■□□□ 1.35
CIITAP33076 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
CIITAP33076 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC23.47■■□□□ 1.35
CIITAP33076 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC23.47■■□□□ 1.35
CIITAP33076 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC23.47■■□□□ 1.35
CIITAP33076 CASP6-205ENST00000505486 538 ntTSL 4 BASIC23.47■■□□□ 1.35
CIITAP33076 AF201337.1-201ENST00000520239 748 ntBASIC23.47■■□□□ 1.35
CIITAP33076 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC23.47■■□□□ 1.35
CIITAP33076 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC23.47■■□□□ 1.35
CIITAP33076 WT1-AS_3.1-201ENST00000613262 234 ntBASIC23.47■■□□□ 1.35
CIITAP33076 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
CIITAP33076 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC23.47■■□□□ 1.35
CIITAP33076 AC116050.2-201ENST00000612102 1779 ntBASIC23.47■■□□□ 1.35
CIITAP33076 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CIITAP33076 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC23.47■■□□□ 1.35
CIITAP33076 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CIITAP33076 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CIITAP33076 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC23.47■■□□□ 1.35
CIITAP33076 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CIITAP33076 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
CIITAP33076 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CIITAP33076 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CIITAP33076 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms