Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SDC1P18827 GABARAPL3-202ENST00000624044 1851 ntBASIC19.81■□□□□ 0.76
SDC1P18827 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SDC1P18827 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SDC1P18827 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SDC1P18827 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
SDC1P18827 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.8■□□□□ 0.76
SDC1P18827 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SDC1P18827 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SDC1P18827 IRS3P-201ENST00000223076 1006 ntBASIC19.8■□□□□ 0.76
SDC1P18827 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SDC1P18827 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SDC1P18827 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.8■□□□□ 0.76
SDC1P18827 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC19.8■□□□□ 0.76
SDC1P18827 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.8■□□□□ 0.76
SDC1P18827 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
SDC1P18827 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SDC1P18827 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SDC1P18827 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SDC1P18827 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SDC1P18827 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.79■□□□□ 0.76
SDC1P18827 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.79■□□□□ 0.76
SDC1P18827 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SDC1P18827 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.79■□□□□ 0.76
SDC1P18827 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.79■□□□□ 0.76
SDC1P18827 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.79■□□□□ 0.76
SDC1P18827 AC007225.1-201ENST00000566331 1836 ntBASIC19.79■□□□□ 0.76
SDC1P18827 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SDC1P18827 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SDC1P18827 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SDC1P18827 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.79■□□□□ 0.76
SDC1P18827 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SDC1P18827 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.79■□□□□ 0.76
SDC1P18827 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.79■□□□□ 0.76
SDC1P18827 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SDC1P18827 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SDC1P18827 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SDC1P18827 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SDC1P18827 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SDC1P18827 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SDC1P18827 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SDC1P18827 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.79■□□□□ 0.76
SDC1P18827 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
SDC1P18827 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SDC1P18827 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SDC1P18827 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SDC1P18827 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
SDC1P18827 AC027612.3-201ENST00000413684 1047 ntBASIC19.78■□□□□ 0.76
SDC1P18827 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SDC1P18827 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.78■□□□□ 0.76
SDC1P18827 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SDC1P18827 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SDC1P18827 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SDC1P18827 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
SDC1P18827 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
SDC1P18827 AC027702.1-201ENST00000563810 1770 ntBASIC19.78■□□□□ 0.76
SDC1P18827 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC1P18827 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC1P18827 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC1P18827 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC1P18827 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SDC1P18827 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.77■□□□□ 0.76
SDC1P18827 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.77■□□□□ 0.76
SDC1P18827 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC1P18827 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC1P18827 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
SDC1P18827 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SDC1P18827 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC1P18827 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
SDC1P18827 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC1P18827 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC1P18827 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.77■□□□□ 0.76
SDC1P18827 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SDC1P18827 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
SDC1P18827 AC008175.2-201ENST00000612840 297 ntBASIC19.77■□□□□ 0.76
SDC1P18827 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SDC1P18827 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC1P18827 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SDC1P18827 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SDC1P18827 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
SDC1P18827 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SDC1P18827 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.76■□□□□ 0.75
SDC1P18827 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
SDC1P18827 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
SDC1P18827 AC011484.1-201ENST00000377652 1995 ntBASIC19.76■□□□□ 0.75
SDC1P18827 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SDC1P18827 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SDC1P18827 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SDC1P18827 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SDC1P18827 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SDC1P18827 POU5F1P4-201ENST00000413175 1085 ntBASIC19.76■□□□□ 0.75
SDC1P18827 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.76■□□□□ 0.75
SDC1P18827 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SDC1P18827 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SDC1P18827 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.76■□□□□ 0.75
SDC1P18827 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SDC1P18827 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SDC1P18827 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
SDC1P18827 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.76■□□□□ 0.75
SDC1P18827 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms