Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RBM10-205ENST00000496012 509 ntTSL 519.95■□□□□ 0.781e-9■■■□□ 17.7
YBX3P16989 LAMTOR5-205ENST00000531779 569 ntTSL 228.86■■■□□ 2.213e-11■■■□□ 17.7
YBX3P16989 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.565e-6■■■□□ 17.7
YBX3P16989 EGLN3-208ENST00000551935 575 ntTSL 420.32■□□□□ 0.845e-6■■■□□ 17.7
YBX3P16989 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.86e-11■■■□□ 17.7
YBX3P16989 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC30.46■■■□□ 2.476e-11■■■□□ 17.7
YBX3P16989 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC26.03■■□□□ 1.766e-11■■■□□ 17.7
YBX3P16989 GCAT-204ENST00000426858 558 ntTSL 423.22■■□□□ 1.314e-7■■■□□ 17.7
YBX3P16989 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.14e-7■■■□□ 17.7
YBX3P16989 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC21.34■■□□□ 1.014e-7■■■□□ 17.7
YBX3P16989 GCAT-206ENST00000451984 716 ntTSL 317.9■□□□□ 0.464e-7■■■□□ 17.7
YBX3P16989 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC25.3■■□□□ 1.646e-7■■■□□ 17.7
YBX3P16989 CHCHD3-202ENST00000423635 1310 ntTSL 1 (best)23.79■■□□□ 1.46e-7■■■□□ 17.7
YBX3P16989 CHCHD3-206ENST00000496427 721 ntTSL 59.86□□□□□ -0.836e-7■■■□□ 17.7
YBX3P16989 RPL36-208ENST00000590786 907 ntTSL 226.16■■□□□ 1.781e-43■■■□□ 17.7
YBX3P16989 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.65□□□□□ -0.064e-6■■■□□ 17.7
YBX3P16989 AHNAK-203ENST00000525875 793 ntTSL 313.6□□□□□ -0.234e-6■■■□□ 17.7
YBX3P16989 MED13L-206ENST00000549786 1041 ntTSL 210.05□□□□□ -0.84e-6■■■□□ 17.7
YBX3P16989 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.144e-6■■■□□ 17.7
YBX3P16989 MED13L-201ENST00000281928 14234 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.143e-7■■■□□ 17.7
YBX3P16989 PCNX1-211ENST00000556272 2942 ntTSL 27.59□□□□□ -1.194e-6■■■□□ 17.7
YBX3P16989 PCNX1-207ENST00000554691 4204 ntTSL 1 (best)6.33□□□□□ -1.44e-6■■■□□ 17.7
YBX3P16989 ATP6V1G1-201ENST00000374050 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.131e-8■■■□□ 17.6
YBX3P16989 PSMD14-204ENST00000478123 478 ntTSL 213.25□□□□□ -0.291e-8■■■□□ 17.6
YBX3P16989 PKN1-205ENST00000586039 686 ntTSL 222.67■■□□□ 1.227e-8■■■□□ 17.6
YBX3P16989 PKN1-215ENST00000592960 677 ntTSL 320.77■□□□□ 0.927e-8■■■□□ 17.6
YBX3P16989 PSMD2-210ENST00000463602 576 ntTSL 48.83□□□□□ -13e-12■■■□□ 17.6
YBX3P16989 ARL16-204ENST00000571082 1526 ntTSL 225.67■■□□□ 1.71e-7■■■□□ 17.6
YBX3P16989 ARL16-203ENST00000570910 1856 ntTSL 521.87■■□□□ 1.091e-7■■■□□ 17.6
YBX3P16989 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC19.98■□□□□ 0.791e-7■■■□□ 17.6
YBX3P16989 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC19.98■□□□□ 0.791e-7■■■□□ 17.6
YBX3P16989 ARL16-213ENST00000577142 2343 ntTSL 219.7■□□□□ 0.741e-7■■■□□ 17.6
YBX3P16989 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.511e-7■■■□□ 17.6
YBX3P16989 ARL16-207ENST00000573392 869 ntTSL 3 BASIC14.99□□□□□ -0.011e-7■■■□□ 17.6
YBX3P16989 DCAKD-207ENST00000593094 1000 ntTSL 235.46■■■■□ 3.276e-8■■■□□ 17.6
YBX3P16989 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.616e-8■■■□□ 17.6
YBX3P16989 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.66e-8■■■□□ 17.6
YBX3P16989 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.076e-8■■■□□ 17.6
YBX3P16989 DCAKD-202ENST00000342350 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.016e-8■■■□□ 17.6
YBX3P16989 DCAKD-203ENST00000452796 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.016e-8■■■□□ 17.6
YBX3P16989 PES1-209ENST00000466614 713 ntTSL 215.8■□□□□ 0.122e-6■■■□□ 17.6
YBX3P16989 PES1-207ENST00000433575 560 ntTSL 510.9□□□□□ -0.662e-6■■■□□ 17.6
YBX3P16989 LAPTM5-203ENST00000476492 960 ntTSL 216.02■□□□□ 0.162e-10■■■□□ 17.6
YBX3P16989 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC31.36■■■□□ 2.612e-8■■■□□ 17.6
YBX3P16989 GRK6-205ENST00000506296 955 ntTSL 524■■□□□ 1.432e-8■■■□□ 17.6
YBX3P16989 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.042e-8■■■□□ 17.6
YBX3P16989 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.822e-8■■■□□ 17.6
YBX3P16989 GRK6-207ENST00000508705 744 ntTSL 517.08■□□□□ 0.322e-8■■■□□ 17.6
YBX3P16989 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC16.11■□□□□ 0.172e-8■■■□□ 17.6
YBX3P16989 GRK6-210ENST00000515666 2141 ntTSL 515.95■□□□□ 0.142e-8■■■□□ 17.6
YBX3P16989 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC15.16■□□□□ 0.022e-8■■■□□ 17.6
YBX3P16989 AL365226.2-201ENST00000418403 397 ntTSL 2 BASIC10.19□□□□□ -0.783e-22■■■□□ 17.6
YBX3P16989 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.297e-7■■■□□ 17.6
YBX3P16989 RPL4-210ENST00000566039 1099 ntTSL 212.07□□□□□ -0.482e-57■■■□□ 17.6
YBX3P16989 RELN-201ENST00000343529 11565 ntAPPRIS P3 TSL 5 BASIC10.39□□□□□ -0.751e-6■■■□□ 17.6
YBX3P16989 RELN-202ENST00000424685 11571 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.751e-6■■■□□ 17.6
YBX3P16989 RELN-203ENST00000428762 11571 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.751e-6■■■□□ 17.6
YBX3P16989 BIVM-202ENST00000448849 3198 ntTSL 1 (best) BASIC15.09■□□□□ 0.012e-6■■■□□ 17.6
YBX3P16989 BIVM-ERCC5-205ENST00000639435 5632 ntAPPRIS P5 TSL 5 BASIC12.99□□□□□ -0.332e-6■■■□□ 17.6
YBX3P16989 BIVM-201ENST00000257336 3859 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.522e-6■■■□□ 17.6
YBX3P16989 BIVM-ERCC5-204ENST00000639132 5195 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.532e-6■■■□□ 17.6
YBX3P16989 BIVM-ERCC5-201ENST00000602836 5143 ntAPPRIS P5 TSL 1 (best) BASIC10.36□□□□□ -0.752e-6■■■□□ 17.6
YBX3P16989 BIVM-ERCC5-202ENST00000638434 615 ntTSL 55.27□□□□□ -1.572e-6■■■□□ 17.6
YBX3P16989 BIVM-ERCC5-203ENST00000639118 731 ntTSL 34.91□□□□□ -1.622e-6■■■□□ 17.6
YBX3P16989 BIVM-205ENST00000490317 1855 ntTSL 1 (best)4.66□□□□□ -1.662e-6■■■□□ 17.6
YBX3P16989 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.781e-30■■■□□ 17.6
YBX3P16989 DTL-205ENST00000496442 485 ntTSL 24.36□□□□□ -1.711e-6■■■□□ 17.6
YBX3P16989 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.442e-12■■■□□ 17.6
YBX3P16989 AUP1-204ENST00000463900 1645 ntTSL 1 (best)22■■□□□ 1.112e-12■■■□□ 17.6
YBX3P16989 AUP1-202ENST00000425118 1581 ntTSL 1 (best)21.77■■□□□ 1.082e-12■■■□□ 17.6
YBX3P16989 AUP1-206ENST00000466894 1658 ntTSL 520.7■□□□□ 0.912e-12■■■□□ 17.6
YBX3P16989 AUP1-208ENST00000486234 984 ntTSL 516.36■□□□□ 0.212e-12■■■□□ 17.6
YBX3P16989 AUP1-203ENST00000462297 457 ntTSL 312.64□□□□□ -0.392e-12■■■□□ 17.6
YBX3P16989 FAF1-201ENST00000371778 1643 ntTSL 1 (best) BASIC12.51□□□□□ -0.414e-7■■■□□ 17.6
YBX3P16989 PSMD2-211ENST00000466987 530 ntTSL 213.07□□□□□ -0.329e-21■■■□□ 17.6
YBX3P16989 BCOR-210ENST00000442018 2189 ntTSL 211.39□□□□□ -0.591e-7■■■□□ 17.6
YBX3P16989 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC34.05■■■■□ 3.047e-7■■■□□ 17.6
YBX3P16989 PRRC2C-210ENST00000492811 379 ntTSL 26.22□□□□□ -1.411e-7■■■□□ 17.6
YBX3P16989 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC16.11■□□□□ 0.174e-23■■■□□ 17.6
YBX3P16989 XPOT-206ENST00000542958 1321 ntTSL 56.73□□□□□ -1.333e-8■■■□□ 17.6
YBX3P16989 PRDX6-202ENST00000460950 809 ntTSL 213.47□□□□□ -0.256e-34■■■□□ 17.6
YBX3P16989 FXN-202ENST00000396364 980 ntTSL 5 BASIC26.41■■□□□ 1.822e-8■■■□□ 17.5
YBX3P16989 FXN-203ENST00000396366 922 ntTSL 2 BASIC24.64■■□□□ 1.542e-8■■■□□ 17.5
YBX3P16989 STARD10-217ENST00000543089 506 ntTSL 1 (best)22.5■■□□□ 1.192e-8■■■□□ 17.5
YBX3P16989 STARD10-202ENST00000400925 541 ntTSL 216.93■□□□□ 0.32e-8■■■□□ 17.5
YBX3P16989 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.12e-8■■■□□ 17.5
YBX3P16989 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC8.81□□□□□ -12e-8■■■□□ 17.5
YBX3P16989 FXN-204ENST00000484259 359 ntTSL 33.65□□□□□ -1.832e-8■■■□□ 17.5
YBX3P16989 C8orf59-211ENST00000615071 344 ntTSL 27.73□□□□□ -1.173e-6■■■□□ 17.5
YBX3P16989 BID-214ENST00000617586 542 ntTSL 5 BASIC28.2■■■□□ 2.12e-7■■■□□ 17.5
YBX3P16989 TNPO1-203ENST00000505082 543 ntTSL 45.32□□□□□ -1.569e-7■■■□□ 17.5
YBX3P16989 TNPO1-206ENST00000508762 564 ntTSL 43.6□□□□□ -1.839e-7■■■□□ 17.5
YBX3P16989 SAP18-202ENST00000450573 479 ntTSL 217.44■□□□□ 0.383e-6■■■□□ 17.5
YBX3P16989 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.293e-6■■■□□ 17.5
YBX3P16989 SAP18-208ENST00000621421 2300 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.223e-6■■■□□ 17.5
YBX3P16989 SAP18-207ENST00000607003 2234 ntAPPRIS ALT1 TSL 1 (best) BASIC11.03□□□□□ -0.643e-6■■■□□ 17.5
YBX3P16989 SAP18-203ENST00000467636 670 ntTSL 59.85□□□□□ -0.833e-6■■■□□ 17.5
YBX3P16989 SAP18-204ENST00000471009 670 ntTSL 29.55□□□□□ -0.883e-6■■■□□ 17.5
YBX3P16989 SAP18-206ENST00000492245 405 ntTSL 48.62□□□□□ -1.033e-6■■■□□ 17.5
YBX3P16989 XRN2-201ENST00000377191 3437 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.91e-6■■■□□ 17.5
Retrieved 100 of 29,075 protein–RNA pairs in 454.2 ms