Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC18.48■□□□□ 0.55
LIMS3P0CW19 AC136469.2-201ENST00000623944 1028 ntBASIC18.48■□□□□ 0.55
LIMS3P0CW19 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.48■□□□□ 0.55
LIMS3P0CW19 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMS3P0CW19 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.48■□□□□ 0.55
LIMS3P0CW19 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
LIMS3P0CW19 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.48■□□□□ 0.55
LIMS3P0CW19 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
LIMS3P0CW19 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMS3P0CW19 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMS3P0CW19 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMS3P0CW19 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMS3P0CW19 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIMS3P0CW19 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.47■□□□□ 0.55
LIMS3P0CW19 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMS3P0CW19 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMS3P0CW19 SYT6-210ENST00000641643 1587 ntBASIC18.47■□□□□ 0.55
LIMS3P0CW19 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMS3P0CW19 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMS3P0CW19 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LIMS3P0CW19 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC18.47■□□□□ 0.55
LIMS3P0CW19 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LIMS3P0CW19 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
LIMS3P0CW19 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
LIMS3P0CW19 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMS3P0CW19 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIMS3P0CW19 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LIMS3P0CW19 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC18.47■□□□□ 0.55
LIMS3P0CW19 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LIMS3P0CW19 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMS3P0CW19 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMS3P0CW19 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
LIMS3P0CW19 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.46■□□□□ 0.55
LIMS3P0CW19 OR2A1-AS1-204ENST00000470435 602 ntBASIC18.46■□□□□ 0.55
LIMS3P0CW19 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC18.46■□□□□ 0.55
LIMS3P0CW19 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC18.46■□□□□ 0.55
LIMS3P0CW19 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
LIMS3P0CW19 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC18.46■□□□□ 0.55
LIMS3P0CW19 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC18.46■□□□□ 0.55
LIMS3P0CW19 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMS3P0CW19 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.46■□□□□ 0.55
LIMS3P0CW19 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIMS3P0CW19 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
LIMS3P0CW19 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIMS3P0CW19 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIMS3P0CW19 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIMS3P0CW19 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIMS3P0CW19 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.45■□□□□ 0.54
LIMS3P0CW19 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LIMS3P0CW19 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC18.45■□□□□ 0.54
LIMS3P0CW19 BX005040.4-201ENST00000637145 1518 ntBASIC18.45■□□□□ 0.54
LIMS3P0CW19 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.45■□□□□ 0.54
LIMS3P0CW19 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIMS3P0CW19 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIMS3P0CW19 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC18.45■□□□□ 0.54
LIMS3P0CW19 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIMS3P0CW19 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC18.45■□□□□ 0.54
LIMS3P0CW19 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LIMS3P0CW19 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIMS3P0CW19 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIMS3P0CW19 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIMS3P0CW19 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.45■□□□□ 0.54
LIMS3P0CW19 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIMS3P0CW19 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIMS3P0CW19 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.44■□□□□ 0.54
LIMS3P0CW19 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
LIMS3P0CW19 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIMS3P0CW19 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LIMS3P0CW19 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIMS3P0CW19 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LIMS3P0CW19 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC18.44■□□□□ 0.54
LIMS3P0CW19 AC011298.3-201ENST00000615796 283 ntBASIC18.44■□□□□ 0.54
LIMS3P0CW19 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIMS3P0CW19 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
LIMS3P0CW19 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIMS3P0CW19 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIMS3P0CW19 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIMS3P0CW19 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18.44■□□□□ 0.54
LIMS3P0CW19 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC18.43■□□□□ 0.54
LIMS3P0CW19 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.43■□□□□ 0.54
LIMS3P0CW19 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMS3P0CW19 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMS3P0CW19 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMS3P0CW19 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMS3P0CW19 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LIMS3P0CW19 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMS3P0CW19 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMS3P0CW19 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMS3P0CW19 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMS3P0CW19 SNX3-202ENST00000349379 890 ntTSL 2 BASIC18.43■□□□□ 0.54
LIMS3P0CW19 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC18.43■□□□□ 0.54
LIMS3P0CW19 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMS3P0CW19 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.43■□□□□ 0.54
LIMS3P0CW19 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.43■□□□□ 0.54
LIMS3P0CW19 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMS3P0CW19 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LIMS3P0CW19 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC18.43■□□□□ 0.54
LIMS3P0CW19 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC18.43■□□□□ 0.54
LIMS3P0CW19 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMS3P0CW19 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms