Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC27.7■■■□□ 2.03
COL3A1P02461 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC27.7■■■□□ 2.03
COL3A1P02461 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC27.7■■■□□ 2.03
COL3A1P02461 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC27.7■■■□□ 2.02
COL3A1P02461 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
COL3A1P02461 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC27.7■■■□□ 2.02
COL3A1P02461 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
COL3A1P02461 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
COL3A1P02461 VMO1-204ENST00000441199 741 ntTSL 2 BASIC27.7■■■□□ 2.02
COL3A1P02461 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC27.7■■■□□ 2.02
COL3A1P02461 AC092118.2-201ENST00000613495 667 ntBASIC27.7■■■□□ 2.02
COL3A1P02461 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC27.7■■■□□ 2.02
COL3A1P02461 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC27.69■■■□□ 2.02
COL3A1P02461 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC27.69■■■□□ 2.02
COL3A1P02461 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC27.69■■■□□ 2.02
COL3A1P02461 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC27.69■■■□□ 2.02
COL3A1P02461 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC27.69■■■□□ 2.02
COL3A1P02461 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC27.69■■■□□ 2.02
COL3A1P02461 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
COL3A1P02461 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
COL3A1P02461 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC27.69■■■□□ 2.02
COL3A1P02461 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC27.69■■■□□ 2.02
COL3A1P02461 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
COL3A1P02461 AC073210.2-201ENST00000430369 194 ntBASIC27.69■■■□□ 2.02
COL3A1P02461 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC27.69■■■□□ 2.02
COL3A1P02461 PBX1-209ENST00000485769 834 ntTSL 2 BASIC27.69■■■□□ 2.02
COL3A1P02461 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC27.69■■■□□ 2.02
COL3A1P02461 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC27.69■■■□□ 2.02
COL3A1P02461 MYC-209ENST00000641252 345 ntBASIC27.69■■■□□ 2.02
COL3A1P02461 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC27.69■■■□□ 2.02
COL3A1P02461 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC27.68■■■□□ 2.02
COL3A1P02461 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC27.68■■■□□ 2.02
COL3A1P02461 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
COL3A1P02461 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
COL3A1P02461 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC27.68■■■□□ 2.02
COL3A1P02461 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC27.68■■■□□ 2.02
COL3A1P02461 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC27.68■■■□□ 2.02
COL3A1P02461 ISCU-212ENST00000547005 795 ntTSL 3 BASIC27.68■■■□□ 2.02
COL3A1P02461 AC083880.1-201ENST00000608266 535 ntBASIC27.68■■■□□ 2.02
COL3A1P02461 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC27.68■■■□□ 2.02
COL3A1P02461 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC27.68■■■□□ 2.02
COL3A1P02461 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC27.68■■■□□ 2.02
COL3A1P02461 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC27.68■■■□□ 2.02
COL3A1P02461 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
COL3A1P02461 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC27.67■■■□□ 2.02
COL3A1P02461 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
COL3A1P02461 KRT17P1-201ENST00000399211 1546 ntBASIC27.67■■■□□ 2.02
COL3A1P02461 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC27.67■■■□□ 2.02
COL3A1P02461 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
COL3A1P02461 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC27.67■■■□□ 2.02
COL3A1P02461 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC27.67■■■□□ 2.02
COL3A1P02461 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC27.67■■■□□ 2.02
COL3A1P02461 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC27.67■■■□□ 2.02
COL3A1P02461 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC27.67■■■□□ 2.02
COL3A1P02461 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
COL3A1P02461 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC27.67■■■□□ 2.02
COL3A1P02461 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC27.67■■■□□ 2.02
COL3A1P02461 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC27.67■■■□□ 2.02
COL3A1P02461 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC27.67■■■□□ 2.02
COL3A1P02461 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC27.66■■■□□ 2.02
COL3A1P02461 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC27.66■■■□□ 2.02
COL3A1P02461 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
COL3A1P02461 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC27.66■■■□□ 2.02
COL3A1P02461 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC27.66■■■□□ 2.02
COL3A1P02461 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
COL3A1P02461 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC27.66■■■□□ 2.02
COL3A1P02461 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
COL3A1P02461 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC27.66■■■□□ 2.02
COL3A1P02461 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC27.66■■■□□ 2.02
COL3A1P02461 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC27.66■■■□□ 2.02
COL3A1P02461 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC27.66■■■□□ 2.02
COL3A1P02461 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC27.66■■■□□ 2.02
COL3A1P02461 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
COL3A1P02461 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
COL3A1P02461 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
COL3A1P02461 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
COL3A1P02461 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
COL3A1P02461 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
COL3A1P02461 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
COL3A1P02461 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
COL3A1P02461 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC27.65■■■□□ 2.02
COL3A1P02461 CYP21A1P-202ENST00000354927 1481 ntBASIC27.65■■■□□ 2.02
COL3A1P02461 AL355472.2-201ENST00000422958 438 ntBASIC27.64■■■□□ 2.02
COL3A1P02461 KLF13-207ENST00000560473 489 ntTSL 3 BASIC27.64■■■□□ 2.02
COL3A1P02461 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC27.64■■■□□ 2.02
COL3A1P02461 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC27.64■■■□□ 2.02
COL3A1P02461 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC27.64■■■□□ 2.02
COL3A1P02461 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC27.64■■■□□ 2.02
COL3A1P02461 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
COL3A1P02461 WWC2-AS2-201ENST00000578387 2183 ntBASIC27.64■■■□□ 2.02
COL3A1P02461 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC27.64■■■□□ 2.01
COL3A1P02461 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
COL3A1P02461 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
COL3A1P02461 BX276092.2-201ENST00000417668 665 ntBASIC27.64■■■□□ 2.01
COL3A1P02461 PPP1R14BP2-201ENST00000426284 444 ntBASIC27.64■■■□□ 2.01
COL3A1P02461 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC27.64■■■□□ 2.01
COL3A1P02461 CYP2T3P-201ENST00000601990 817 ntBASIC27.64■■■□□ 2.01
COL3A1P02461 AC100791.3-201ENST00000617619 330 ntBASIC27.64■■■□□ 2.01
COL3A1P02461 PFKL-212ENST00000628044 129 ntTSL 3 BASIC27.64■■■□□ 2.01
COL3A1P02461 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC27.63■■■□□ 2.01
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms