Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC25.22■■□□□ 1.63
COL1A1P02452 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC25.22■■□□□ 1.63
COL1A1P02452 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
COL1A1P02452 OR2A1-AS1-201ENST00000462305 773 ntBASIC25.21■■□□□ 1.63
COL1A1P02452 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC25.21■■□□□ 1.63
COL1A1P02452 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC25.21■■□□□ 1.63
COL1A1P02452 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC25.21■■□□□ 1.63
COL1A1P02452 AC133561.1-201ENST00000568600 2415 ntBASIC25.21■■□□□ 1.63
COL1A1P02452 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC25.21■■□□□ 1.63
COL1A1P02452 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC25.21■■□□□ 1.63
COL1A1P02452 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC25.21■■□□□ 1.63
COL1A1P02452 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
COL1A1P02452 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
COL1A1P02452 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
COL1A1P02452 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
COL1A1P02452 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
COL1A1P02452 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC25.21■■□□□ 1.63
COL1A1P02452 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC25.21■■□□□ 1.63
COL1A1P02452 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC25.21■■□□□ 1.63
COL1A1P02452 CYP2T3P-201ENST00000601990 817 ntBASIC25.21■■□□□ 1.63
COL1A1P02452 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC25.21■■□□□ 1.63
COL1A1P02452 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
COL1A1P02452 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.63
COL1A1P02452 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
COL1A1P02452 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
COL1A1P02452 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
COL1A1P02452 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
COL1A1P02452 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
COL1A1P02452 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC25.2■■□□□ 1.62
COL1A1P02452 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC25.2■■□□□ 1.62
COL1A1P02452 VMO1-204ENST00000441199 741 ntTSL 2 BASIC25.2■■□□□ 1.62
COL1A1P02452 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
COL1A1P02452 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
COL1A1P02452 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
COL1A1P02452 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC25.19■■□□□ 1.62
COL1A1P02452 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC25.19■■□□□ 1.62
COL1A1P02452 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
COL1A1P02452 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
COL1A1P02452 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
COL1A1P02452 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC25.19■■□□□ 1.62
COL1A1P02452 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC25.19■■□□□ 1.62
COL1A1P02452 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC25.19■■□□□ 1.62
COL1A1P02452 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC25.19■■□□□ 1.62
COL1A1P02452 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
COL1A1P02452 ARL16-209ENST00000573715 763 ntTSL 3 BASIC25.19■■□□□ 1.62
COL1A1P02452 ARL16-211ENST00000576135 694 ntTSL 3 BASIC25.19■■□□□ 1.62
COL1A1P02452 INO80E-214ENST00000620599 515 ntTSL 2 BASIC25.19■■□□□ 1.62
COL1A1P02452 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
COL1A1P02452 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
COL1A1P02452 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
COL1A1P02452 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC25.19■■□□□ 1.62
COL1A1P02452 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
COL1A1P02452 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
COL1A1P02452 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC25.18■■□□□ 1.62
COL1A1P02452 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC25.18■■□□□ 1.62
COL1A1P02452 AC006058.3-201ENST00000606217 1069 ntBASIC25.18■■□□□ 1.62
COL1A1P02452 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
COL1A1P02452 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
COL1A1P02452 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC25.18■■□□□ 1.62
COL1A1P02452 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
COL1A1P02452 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC25.17■■□□□ 1.62
COL1A1P02452 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC25.17■■□□□ 1.62
COL1A1P02452 AC007322.3-201ENST00000426526 701 ntBASIC25.17■■□□□ 1.62
COL1A1P02452 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC25.17■■□□□ 1.62
COL1A1P02452 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC25.17■■□□□ 1.62
COL1A1P02452 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
COL1A1P02452 MYB-221ENST00000527615 2381 ntTSL 5 BASIC25.17■■□□□ 1.62
COL1A1P02452 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC25.17■■□□□ 1.62
COL1A1P02452 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC25.17■■□□□ 1.62
COL1A1P02452 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC25.17■■□□□ 1.62
COL1A1P02452 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC25.17■■□□□ 1.62
COL1A1P02452 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
COL1A1P02452 SAPCD2P1-201ENST00000395413 1184 ntBASIC25.16■■□□□ 1.62
COL1A1P02452 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC25.16■■□□□ 1.62
COL1A1P02452 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC25.16■■□□□ 1.62
COL1A1P02452 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC25.16■■□□□ 1.62
COL1A1P02452 UNC93B5-201ENST00000530315 699 ntBASIC25.16■■□□□ 1.62
COL1A1P02452 MMAB-206ENST00000540016 945 ntTSL 3 BASIC25.16■■□□□ 1.62
COL1A1P02452 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC25.16■■□□□ 1.62
COL1A1P02452 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
COL1A1P02452 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
COL1A1P02452 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
COL1A1P02452 BAALC-201ENST00000297574 801 ntTSL 3 BASIC25.15■■□□□ 1.62
COL1A1P02452 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC25.15■■□□□ 1.62
COL1A1P02452 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC25.15■■□□□ 1.62
COL1A1P02452 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL1A1P02452 SERPINH1P1-201ENST00000419794 1249 ntBASIC25.15■■□□□ 1.62
COL1A1P02452 CDV3P1-201ENST00000471403 739 ntBASIC25.15■■□□□ 1.62
COL1A1P02452 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC25.15■■□□□ 1.62
COL1A1P02452 MMD2-204ENST00000612910 778 ntTSL 5 BASIC25.15■■□□□ 1.62
COL1A1P02452 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL1A1P02452 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
COL1A1P02452 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL1A1P02452 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL1A1P02452 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
COL1A1P02452 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
COL1A1P02452 AC128676.1-201ENST00000454392 318 ntBASIC25.15■■□□□ 1.62
COL1A1P02452 AC026366.1-201ENST00000488803 879 ntBASIC25.15■■□□□ 1.62
COL1A1P02452 AC100791.3-201ENST00000617619 330 ntBASIC25.15■■□□□ 1.62
COL1A1P02452 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms